bcgsc / mirnaLinks
microRNA profiling pipeline
☆79Updated 3 years ago
Alternatives and similar repositories for mirna
Users that are interested in mirna are comparing it to the libraries listed below
Sorting:
- RNA-Seq analysis workflow☆104Updated 4 years ago
- ☆118Updated 2 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- deconstructSigs☆143Updated 2 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆71Updated 3 years ago
- ☆116Updated 2 years ago
- Reference data: BED files, genes, transcripts, variations.☆85Updated 7 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated last year
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 6 years ago
- ☆88Updated 2 months ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆170Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last week
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- RNA-seq data analysis practical☆61Updated 11 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated this week
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago