bcgsc / mirnaLinks
microRNA profiling pipeline
☆79Updated 3 years ago
Alternatives and similar repositories for mirna
Users that are interested in mirna are comparing it to the libraries listed below
Sorting:
- RNA-Seq analysis workflow☆105Updated 4 years ago
- ☆120Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Reference data: BED files, genes, transcripts, variations.☆88Updated 8 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- ☆117Updated 2 years ago
- ☆56Updated last month
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Updated 8 years ago
- RNA-seq data analysis practical☆60Updated 11 years ago
- deconstructSigs☆144Updated 2 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Updated 6 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 4 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆149Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆69Updated last week
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- ☆90Updated 5 months ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- Code for biostar tutorials - mostly R and Perl☆50Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated last week
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Updated 3 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆74Updated 3 years ago