Alternatives and similar repositories for GREEN-VARAN

Users that are interested in GREEN-VARAN are comparing it to the libraries listed below

• lh3 / klib.nim
  Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang
  ☆32Updated 5 years ago
• brentp / seqcover
  seqcover allows users to view coverage for hundreds of genes and dozens of samples
  ☆52Updated 4 years ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆24Updated last month
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 5 months ago
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated 3 months ago
• tf2 / CNest
  Copy Number Methods for Detection and Genome Wide Association Tests
  ☆22Updated 8 months ago
• SeqOne / clinvcf
  Generate an enhanced VCF files from ClinVar XML Full releases
  ☆14Updated 2 years ago
• brentp / hts-nim-tools
  useful command-line tools written to showcase hts-nim
  ☆49Updated 4 years ago
• quinlan-lab / STRling
  Detect novel (and reference) STR expansions from short-read data
  ☆67Updated last year
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 3 months ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆19Updated 8 months ago
• gjun / muCNV
  ☆20Updated last year
• andreas-wilm / nimreadfq
  A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser
  ☆15Updated 2 years ago
• brentp / hileup
  horizontal pileup
  ☆16Updated 2 years ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆45Updated last month
• kcleal / SV_Benchmark_CMRG_GIAB
  Structural variant benchmark
  ☆18Updated 4 months ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated last year
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 3 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated last month
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆29Updated last year
• slzarate / parliament2
  Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
  ☆22Updated 3 years ago
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆32Updated last year
• AlgoLab / shark
  Mapping-free software for fishing relevant reads in an RNA-Seq sample
  ☆18Updated 4 years ago
• J35P312 / FindSV
  Structural variant pipeline
  ☆17Updated 5 years ago
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆60Updated last year
• mebbert / Dark_and_Camouflaged_genes
  ☆23Updated last month
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆37Updated 4 months ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆57Updated 3 years ago
• SeqOne / variant_alert
  Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…
  ☆14Updated 3 years ago