edg1983 / GREEN-VARANLinks
Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF
☆18Updated 2 weeks ago
Alternatives and similar repositories for GREEN-VARAN
Users that are interested in GREEN-VARAN are comparing it to the libraries listed below
Sorting:
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Updated 4 years ago
- Structural variant benchmark☆18Updated 3 months ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 7 months ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 months ago
- ☆20Updated last year
- Location of public benchmarking; primarily final results☆18Updated 4 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆21Updated 3 years ago
- ☆21Updated 2 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆21Updated 3 months ago
- horizontal pileup☆16Updated 2 years ago
- Sample Contamination Estimate from VCF☆19Updated 7 months ago
- ☆25Updated this week
- Detect novel (and reference) STR expansions from short-read data☆67Updated last year
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated last week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 3 weeks ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆23Updated 4 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 11 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last week
- Detects human contamination in bam files☆16Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated last week
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- useful command-line tools written to showcase hts-nim☆49Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- ☆22Updated 6 months ago
- Long RNA-seq analysis workflow☆18Updated 6 months ago