Alternatives and similar repositories for GREEN-VARAN

Users that are interested in GREEN-VARAN are comparing it to the libraries listed below

• tf2 / CNest
  Copy Number Methods for Detection and Genome Wide Association Tests
  ☆22Updated last year
• HurlesGroupSanger / DeNovoWEST
  ☆23Updated 2 weeks ago
• lh3 / klib.nim
  Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang
  ☆31Updated 5 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 10 months ago
• ImperialCardioGenetics / uORFs
  ☆18Updated 5 years ago
• brentp / seqcover
  seqcover allows users to view coverage for hundreds of genes and dozens of samples
  ☆52Updated 4 years ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆23Updated 5 months ago
• gymreklab / chips
  Simulation tool for ChIP- and other -seq experiments
  ☆14Updated 2 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated 4 months ago
• gjun / muCNV
  ☆20Updated 2 years ago
• CCICB / introme
  Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
  ☆21Updated 2 weeks ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 3 weeks ago
• GooglingTheCancerGenome / sv-channels
  Deep learning-based structural variant filtering method
  ☆39Updated 2 years ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆20Updated last year
• tkzeng / GeneBayes
  ☆29Updated 5 months ago
• quinlan-lab / STRling
  Detect novel (and reference) STR expansions from short-read data
  ☆69Updated last week
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 9 months ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆20Updated 2 weeks ago
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆34Updated 3 years ago
• kcleal / SV_Benchmark_CMRG_GIAB
  Structural variant benchmark
  ☆21Updated 9 months ago
• brentp / hts-nim-tools
  useful command-line tools written to showcase hts-nim
  ☆50Updated 5 years ago
• cortes-ciriano-lab / ReConPlot
  ☆24Updated last year
• andreas-wilm / nimreadfq
  A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser
  ☆15Updated 2 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆30Updated last year
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated last month
• AlgoLab / shark
  Mapping-free software for fishing relevant reads in an RNA-Seq sample
  ☆19Updated 5 years ago
• brentp / hileup
  horizontal pileup
  ☆16Updated 3 years ago
• talkowski-lab / gnomad-sv-pipeline
  Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)
  ☆37Updated 5 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆39Updated last year