jokergoo / simona
Semantic Similarity in Bio-Ontologies
☆17Updated 7 months ago
Alternatives and similar repositories for simona:
Users that are interested in simona are comparing it to the libraries listed below
- R interface to genome annotation files and the UCSC genome browser☆32Updated last month
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last week
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- ☆26Updated 2 years ago
- the manifesto, workshops and tutorials of the tidy transcriptomics☆13Updated last week
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 2 weeks ago
- Drawing 'dendrogram' using 'ggtree'☆13Updated 3 weeks ago
- Save and load your R sessions faster using parallel compression☆25Updated 6 years ago
- Open-Source Software for Omic Data Analysis and Visualization☆34Updated last month
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆45Updated 3 weeks ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated 2 weeks ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- An R package to plot interactive three-way differential expression analysis☆37Updated last year
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- Reproducible GSEA Benchmarking☆13Updated 3 weeks ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 3 months ago
- Template for building a bioconductor workshop package using github actions☆20Updated 10 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 7 months ago
- R interface to 'Gos'☆38Updated 2 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Sample code for ldsc analyses in UKBB☆30Updated 2 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated last year
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 4 months ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆22Updated 5 months ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Gene-level general linear mixed model☆21Updated 3 months ago