Alternatives and similar repositories for simona:

Users that are interested in simona are comparing it to the libraries listed below

• lawremi / rtracklayer
  R interface to genome annotation files and the UCSC genome browser
  ☆31Updated 2 weeks ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆21Updated last month
• datapplab / SBGNview
  ☆26Updated 2 years ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆29Updated 2 weeks ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 5 years ago
• LieberInstitute / megadepth
  R interface to megadepth: BigWig and BAM related utilities
  ☆12Updated 3 months ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆21Updated 2 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆24Updated last year
• carpentries-incubator / bioc-rnaseq
  Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
  ☆22Updated last month
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 4 years ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated 2 months ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆19Updated last year
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆36Updated last year
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 4 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆20Updated 2 months ago
• juanbot / CoExpNets
  Co-expression network management based on WGCNA + k-means
  ☆18Updated 3 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated 11 months ago
• tidyomics / tidyomicsBlog
  the manifesto, workshops and tutorials of the tidy transcriptomics
  ☆12Updated 10 months ago
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆11Updated 4 months ago
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆13Updated 2 weeks ago
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 2 years ago
• barkasn / fastSave
  Save and load your R sessions faster using parallel compression
  ☆25Updated 6 years ago
• Bioconductor / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated this week
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 3 years ago
• zhengxwen / SeqArray
  Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)
  ☆45Updated this week
• gosling-lang / grosling
  R interface to 'Gos'
  ☆38Updated 2 years ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆28Updated 2 months ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated 5 months ago