☆19Jul 15, 2026Updated last month
Alternatives and similar repositories for owl
Users that are interested in owl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆24Jul 30, 2026Updated last month
- A tool for sniffing out the differences in vari-Ants☆50Aug 10, 2026Updated 2 weeks ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 8 months ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data☆81Nov 4, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A battery of methylation tools for PacBio HiFi reads☆54Jul 15, 2026Updated last month
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated last month
- An HLA star-calling tool for PacBio HiFi data types☆23Feb 26, 2025Updated last year
- Blazingly fast, streaming duplicate detection for NGS data☆21Updated this week
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆28Updated this week
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 8 months ago
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- ☆11Apr 3, 2023Updated 3 years ago
- ☆21Dec 26, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆24Jul 15, 2026Updated last month
- Complex structural variant visualization for HiFi sequencing data☆51Aug 6, 2026Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated last month
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆70Apr 10, 2025Updated last year
- Fast interval intersection library☆46Jul 14, 2026Updated last month
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing☆43Jun 8, 2026Updated 2 months ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 5 months ago
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 8 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆12Jan 10, 2017Updated 9 years ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆22Jul 23, 2026Updated last month
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆87May 27, 2026Updated 3 months ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 4 years ago
- HiFi-based caller for highly similar paralogous genes☆73Aug 14, 2026Updated 2 weeks ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- An extensible and performant aligner and read mapper☆103Jul 27, 2026Updated last month
- Working space for the GIAB TR benchmarking project☆24Oct 24, 2024Updated last year
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 5 months ago
- bioinformatics toolkit in rust☆107Aug 16, 2026Updated 2 weeks ago