Rust-based sra-tools
☆78Nov 9, 2026Updated this week
Alternatives and similar repositories for sracha-rs
Users that are interested in sracha-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 8 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 10 months ago
- All The Bacteria CLI — query 3.2M bacterial genomes (AMR, MLST, assemblies, metadata) from the terminal☆37Sep 2, 2026Updated 2 months ago
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆34Oct 14, 2026Updated last month
- Genome browser 🧬👀🚀☆35Nov 5, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆16Jun 17, 2026Updated 4 months ago
- Fast sequence distance estimates☆36Updated this week
- fastrgz is a fast and efficient gzip compression tool for sequencing data (FASTQ)☆31Jun 18, 2026Updated 4 months ago
- ICanHazSequenceMetadata☆10Sep 15, 2026Updated last month
- ☆39Updated this week
- ☆13Updated this week
- Successor of bwa-mem for short-read alignment☆363Oct 30, 2026Updated 2 weeks ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 6 months ago
- Identify which human reference genome was used to align a BAM/SAM/CRAM file☆34Jul 19, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Build phylogenomic datasets in seconds☆15Updated this week
- Fast long-read RNA-seq mapping to a transcriptome with locally consistent parsing☆30Updated this week
- ☆10Jan 20, 2026Updated 9 months ago
- ☆121Oct 16, 2026Updated 3 weeks ago
- An extensible and performant aligner and read mapper☆109Oct 14, 2026Updated 3 weeks ago
- Calculate assocations between genes and traits☆32Updated this week
- an API for intersections of genomic data☆150Oct 4, 2026Updated last month
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Oct 8, 2026Updated last month
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Partial Order Alignment with consensus CLI and Rust library☆13Oct 21, 2026Updated 3 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Nov 6, 2026Updated last week
- Genome size estimation from long read overlaps☆98Sep 8, 2026Updated 2 months ago
- Creating alignment plots from bam files☆138Nov 4, 2026Updated last week
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆31Oct 20, 2026Updated 3 weeks ago
- Spiritual successor to picard for sequencing qc☆65Updated this week
- Fast DNA search and [host] depletion using minimizers☆128Updated this week
- Compression-focused fork of sylph, a fast species-level metagenomic profiler☆13Oct 15, 2026Updated 3 weeks ago
- Workflow for somatic variant calling of long read data☆32Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast, highly accurate, read-trimming for NGS data.☆26Updated this week
- An efficient CLI to extract sequences from the SRA☆132Jun 12, 2026Updated 5 months ago
- The Pathogenwatch Vibrio cholerae genotyping tool☆11Oct 9, 2026Updated last month
- Remove human reads from a sequencing run☆54Jun 29, 2026Updated 4 months ago
- Homology-based ANI estimation at unprecedented scales🦀☆30Updated this week
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆72Apr 10, 2025Updated last year
Are these results useful?