yongzhuang / DeepSVFilter
☆17Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for DeepSVFilter
- Evaluate the performances (precision and recall) of structural variation (SV) callers☆34Updated last month
- ☆33Updated 3 weeks ago
- ☆22Updated 3 years ago
- ☆27Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆36Updated 3 weeks ago
- A tool to detect structural variant☆18Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆21Updated last year
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- An insertion caller for Illumina paired-end WGS data.☆22Updated 3 months ago
- Extract modifed base call information from Guppy Fast5 files.☆13Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated 8 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated 2 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆33Updated 4 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆17Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆36Updated this week
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆41Updated last month
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆33Updated 4 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆15Updated 5 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆38Updated last month
- Toolkit for calling structural variants using short or long reads☆99Updated this week
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 6 months ago
- ☆19Updated last year
- Toolkit for genome-wide analysis of tandem repeats☆55Updated this week
- Detection and genotyping of structural variants☆18Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- Deep learning-based structural variant filtering method☆35Updated last year
- Calling deletions using deep convolutional neural☆24Updated 4 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Methylation Phasing for Nanopore Sequencing☆44Updated last year