deepimagej / python4deepimagejLinks
☆14Updated 5 years ago
Alternatives and similar repositories for python4deepimagej
Users that are interested in python4deepimagej are comparing it to the libraries listed below
Sorting:
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Updated 5 years ago
- ☆21Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 11 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆26Updated 5 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 3 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 8 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated 2 months ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 3 years ago
- ☆51Updated 8 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- Particle tracking by solving linear assignment problem.☆61Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 8 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- ☆13Updated 9 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆101Updated last week
- ImageJ plugins to run ilastik workflows☆25Updated last month
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- Tools for distributed alignment of massive images☆91Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated last month
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Updated 3 years ago
- Lectures for a napari training course☆50Updated 2 years ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated last year
- A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.☆87Updated 4 months ago