Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing
☆13Jan 25, 2019Updated 7 years ago
Alternatives and similar repositories for bam2bedGraph2
Users that are interested in bam2bedGraph2 are comparing it to the libraries listed below
Sorting:
- hight performance & useful tools for working with fastq and bam files☆29Jan 25, 2019Updated 7 years ago
- CNV detection tool for WES data☆12Aug 21, 2024Updated last year
- ☆11Sep 23, 2022Updated 3 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 7 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- This repository contains information about ongoing analysis performed by GIAB☆14Aug 30, 2019Updated 6 years ago
- ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow☆20Jan 13, 2026Updated last month
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- Benchmarking of CNV calling tools☆18May 18, 2019Updated 6 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 2 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated last week
- filtering trio-based genetic variants in VCFs for clinical review☆21Aug 18, 2020Updated 5 years ago
- a lightweight bam file depth statistical tool☆161Sep 13, 2024Updated last year
- Annotation of VCF variants with functional impact and from databases (executable+library)☆64Feb 23, 2026Updated last week
- 学习笔记：我的第一个github仓库☆57Jan 13, 2021Updated 5 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Jan 9, 2026Updated last month
- ☆32Apr 17, 2023Updated 2 years ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆26Apr 30, 2018Updated 7 years ago
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆10Feb 24, 2026Updated last week
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆35Jun 17, 2024Updated last year
- Draw Circos in Python☆31Sep 19, 2022Updated 3 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- Classifier of pathogenic non-coding variants in Mendelian diseases☆10Feb 6, 2020Updated 6 years ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- ☆36Apr 13, 2024Updated last year
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Nov 28, 2025Updated 3 months ago
- An automatic classification tool for PVS1 interpretation of null variants☆44Mar 4, 2024Updated last year
- Tcp Server and Client Implementation with multiple client handling.☆12Jul 13, 2025Updated 7 months ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Aug 29, 2025Updated 6 months ago
- Python-based web scraper for extracting gene summaries from GeneCards.☆11Oct 3, 2024Updated last year
- ☆15Nov 6, 2019Updated 6 years ago
- A collection of tools that generate and analyse side-chain rotamer libraries☆10Updated this week
- ☆17May 15, 2025Updated 9 months ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- MGcount github repository☆14Jan 19, 2023Updated 3 years ago