xiongxu / bam2bedGraph2
Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing
☆12Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for bam2bedGraph2
- hight performance & useful tools for working with fastq and bam files☆30Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆18Updated 3 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- A new tool to infer sex from massively parallel sequencing data.☆15Updated 5 months ago
- ☆15Updated 11 months ago
- ☆50Updated last year
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆38Updated 2 months ago
- ☆51Updated 5 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆43Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 5 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 4 months ago
- ☆22Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- ☆12Updated 4 months ago
- A variant caller for the GBA gene using WGS data☆21Updated 3 months ago
- CN-Learn☆29Updated 4 years ago
- ☆45Updated 5 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆48Updated 3 years ago
- ☆36Updated 7 months ago
- Pipeline for structural variation detection in cohorts☆48Updated 3 years ago
- R package for inferring copy number from read depth☆31Updated 2 years ago
- Computes various SV statistics☆14Updated last year
- Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage se…☆16Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆66Updated 2 months ago
- Tools to process LIANTI sequence data☆23Updated 5 years ago
- Structural variant merging tool☆46Updated 3 months ago