Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing
☆13Jan 25, 2019Updated 7 years ago
Alternatives and similar repositories for bam2bedGraph2
Users that are interested in bam2bedGraph2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- hight performance & useful tools for working with fastq and bam files☆28Jan 25, 2019Updated 7 years ago
- ☆11Sep 23, 2022Updated 3 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 8 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- CNV detection tool for WES data☆12Aug 21, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Benchmarking of CNV calling tools☆18May 18, 2019Updated 7 years ago
- This repository contains information about ongoing analysis performed by GIAB☆14Aug 30, 2019Updated 6 years ago
- ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow☆22Jan 13, 2026Updated 4 months ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 2 years ago
- ☆11Jun 14, 2023Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Aug 18, 2020Updated 5 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated 3 months ago
- 学习笔记：我的第一个github仓库☆58Jan 13, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆26Apr 30, 2018Updated 8 years ago
- ☆12Nov 21, 2023Updated 2 years ago
- ☆36Apr 17, 2023Updated 3 years ago
- ☆17Mar 12, 2021Updated 5 years ago
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- Simple Job Manager☆61Jul 20, 2017Updated 8 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- Classifier of pathogenic non-coding variants in Mendelian diseases☆11Feb 6, 2020Updated 6 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- ☆13May 2, 2018Updated 8 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated this week
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- Comprehensive benchmark of structural variant callers☆50Feb 4, 2021Updated 5 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Apr 24, 2026Updated 3 weeks ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆35Jun 17, 2024Updated last year
- Draw Circos in Python☆31Sep 19, 2022Updated 3 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆66Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- call copy number from WES(WXS)☆11May 10, 2021Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆57Updated this week
- mesa package for Methylation Enrichment Sequencing Analysis☆16Updated this week
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 2 years ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆43Nov 21, 2022Updated 3 years ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- An automatic classification tool for PVS1 interpretation of null variants☆46Mar 4, 2024Updated 2 years ago