Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing
☆13Jan 25, 2019Updated 7 years ago
Alternatives and similar repositories for bam2bedGraph2
Users that are interested in bam2bedGraph2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- hight performance & useful tools for working with fastq and bam files☆28Jan 25, 2019Updated 7 years ago
- ☆11Sep 23, 2022Updated 3 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 8 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- CNV detection tool for WES data☆13Aug 21, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Benchmarking of CNV calling tools☆19May 18, 2019Updated 7 years ago
- This repository contains information about ongoing analysis performed by GIAB☆14Aug 30, 2019Updated 6 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 2 years ago
- ☆11Jun 14, 2023Updated 3 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆22Aug 18, 2020Updated 5 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated 5 months ago
- a lightweight bam file depth statistical tool☆163Jul 2, 2026Updated last month
- ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow☆25Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆17Mar 12, 2021Updated 5 years ago
- 学习笔记:我的第一个github仓库☆58Jan 13, 2021Updated 5 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆16Jul 28, 2026Updated 2 weeks ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆26Apr 30, 2018Updated 8 years ago
- ☆13Nov 21, 2023Updated 2 years ago
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- Simple Job Manager☆59Jul 20, 2017Updated 9 years ago
- ☆36Apr 17, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- ☆13May 2, 2018Updated 8 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆40May 19, 2026Updated 2 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆29Jun 1, 2026Updated 2 months ago
- Comprehensive benchmark of structural variant callers☆49Feb 4, 2021Updated 5 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆68Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆36Jun 17, 2024Updated 2 years ago
- Draw Circos in Python☆32Sep 19, 2022Updated 3 years ago
- call copy number from WES(WXS)☆12May 10, 2021Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆60Jul 27, 2026Updated 2 weeks ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆43Nov 21, 2022Updated 3 years ago
- An automatic classification tool for PVS1 interpretation of null variants☆46Mar 4, 2024Updated 2 years ago
- Classifier of pathogenic non-coding variants in Mendelian diseases☆11Feb 6, 2020Updated 6 years ago