genialis / RNAnormLinks
Normalization of RNA-seq gene expression
☆101Updated 4 months ago
Alternatives and similar repositories for RNAnorm
Users that are interested in RNAnorm are comparing it to the libraries listed below
Sorting:
- machine-readable file format for genomic library sequence and structure☆125Updated 3 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated 2 months ago
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 6 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆119Updated last month
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆148Updated last year
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated last month
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated last month
- liftover for python, made fast with cython☆93Updated last month
- Collection of analysis tools for quantitative trait loci☆61Updated 3 weeks ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆182Updated last month
- Updated DANPOS2 to work with python3☆23Updated last year
- Notes on single-cell Hi-C technologies, tools, and data☆86Updated last year
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- Tools for working with BUS files☆102Updated 6 months ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆79Updated 2 weeks ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- ☆38Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- A modular Hi-C mapping pipeline☆100Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated this week
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆192Updated 2 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 11 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆82Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆174Updated 3 weeks ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 4 months ago