Alternatives and similar repositories for cptac

Users that are interested in cptac are comparing it to the libraries listed below

• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆55Updated 2 years ago
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆105Updated 3 weeks ago
• BIMSBbioinfo / VoltRon
  Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
  ☆107Updated 3 weeks ago
• rajewsky-lab / openst
  Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
  ☆105Updated 3 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated last month
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆123Updated 2 weeks ago
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated 4 months ago
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆141Updated 2 years ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆90Updated last month
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆84Updated 11 months ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated this week
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆59Updated last year
• KevinMenden / scaden
  Deep Learning based cell composition analysis with Scaden.
  ☆82Updated 11 months ago
• cantinilab / momix-notebook
  ☆67Updated last year
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆109Updated this week
• gregbellan / Stabl
  ☆66Updated 10 months ago
• snap-stanford / SATURN
  ☆139Updated last year
• suinleelab / deepprofile-study
  Code for paper "A deep profile of gene expression across 18 human cancers"
  ☆27Updated 10 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆148Updated 7 months ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆94Updated 4 years ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆61Updated last week
• lanagarmire / DeepProg
  Deep-Learning framework for multi-omic and survival data integration
  ☆84Updated last year
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆66Updated last year
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆120Updated 2 weeks ago
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆120Updated 4 months ago
• AI4SCR / ATHENA
  ☆35Updated last week
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆103Updated last week
• czbiohub-sf / tabula-muris-senis
  Tabula Muris Senis
  ☆105Updated 2 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆150Updated last year