Python packaging for CPTAC data
☆112Jun 24, 2024Updated last year
Alternatives and similar repositories for cptac
Users that are interested in cptac are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Apr 21, 2026Updated 2 weeks ago
- Proteomics Toolset for Integrative Data Analysis☆26Oct 7, 2025Updated 7 months ago
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆37Mar 5, 2026Updated 2 months ago
- Dataset package for facile training and testing of machine learning/AI algorithms that predict drug response in cancer model systems.☆21Feb 11, 2026Updated 2 months ago
- Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments☆14Apr 29, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tumor Immune Single-cell Hub☆22Aug 13, 2020Updated 5 years ago
- ☆13Mar 19, 2024Updated 2 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆126Apr 19, 2026Updated 2 weeks ago
- Peptide Correlation analysis☆11Oct 3, 2024Updated last year
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jan 15, 2024Updated 2 years ago
- Quantitative proteomics workflow☆16Sep 30, 2022Updated 3 years ago
- ☆13Apr 28, 2024Updated 2 years ago
- Confidence Estimation for Mass Spectrometry Proteomics☆14May 28, 2025Updated 11 months ago
- ☆17Apr 27, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆16Nov 3, 2023Updated 2 years ago
- The repo for LFQ-Analyst☆30Aug 7, 2024Updated last year
- A tool for large scale omics datasets evaluation☆24Jun 14, 2023Updated 2 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆93Nov 17, 2025Updated 5 months ago
- International BioHackathon Directory of Events, Projects and Communities☆12Updated this week
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 5 years ago
- R package for functionally scoring phosphorylation sites☆23Nov 3, 2019Updated 6 years ago
- ☆58Nov 28, 2022Updated 3 years ago
- ☆15May 30, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆23Apr 17, 2026Updated 3 weeks ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 10 months ago
- Layered enrichment analysis tool enables facile enrichment using various statistics at once.☆19Mar 11, 2026Updated last month
- R package for WikiPathways API☆19Nov 3, 2025Updated 6 months ago
- ALD study data analysis☆13Feb 16, 2023Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆83Mar 26, 2026Updated last month
- PyTorch Implementation of CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference☆11May 29, 2024Updated last year
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆29Nov 16, 2024Updated last year
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Aug 17, 2023Updated 2 years ago
- Identify and correct invalid gene symbols☆62Nov 16, 2024Updated last year