a pytorch version for GREMLIN, used to predict the protein contacts by coevolution method.
☆17May 30, 2021Updated 4 years ago
Alternatives and similar repositories for GREMLIN_PYTORCH
Users that are interested in GREMLIN_PYTORCH are comparing it to the libraries listed below
Sorting:
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- ☆33Sep 19, 2025Updated 5 months ago
- Rotamer Interaction Field Python Libraries for Computational Protein Design☆13Feb 2, 2018Updated 8 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16May 2, 2021Updated 4 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Jun 26, 2022Updated 3 years ago
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 8 months ago
- GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the fam…☆23Jul 3, 2016Updated 9 years ago
- ☆24Jun 16, 2025Updated 8 months ago
- ☆134Sep 14, 2022Updated 3 years ago
- A Light-Weight And Interpretable Molecular Docking Model☆25Oct 23, 2024Updated last year
- Neural network model for prediction of amino-acid sequence from a protein backbone structure☆25Mar 5, 2025Updated last year
- Origin-1: a generative AI platform for de novo antibody design against novel epitopes☆51Jan 15, 2026Updated last month
- Potts model-based protein sequence design☆83Feb 23, 2026Updated 2 weeks ago
- ☆12Sep 13, 2020Updated 5 years ago
- ☆61Apr 9, 2024Updated last year
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Aug 7, 2020Updated 5 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆118Jan 21, 2023Updated 3 years ago
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆75Feb 2, 2026Updated last month
- ☆217Mar 2, 2024Updated 2 years ago
- PyDock Tutorial☆35Jul 2, 2018Updated 7 years ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆71Updated this week
- DLPacker☆32Aug 26, 2024Updated last year
- A PCR primer tool for DNA assembly flows☆33Apr 24, 2024Updated last year
- Metal Activity Heuristic of Metalloprotein and Enzymatic Sites (MAHOMES) - Predicts if a protein bound metal ion is enzymatic or non-enzy…☆11Apr 19, 2022Updated 3 years ago
- A tool that lauches docker jobs on Amazon EC2.☆10May 7, 2019Updated 6 years ago
- functional genomic data integration☆10Sep 22, 2019Updated 6 years ago
- ☆16Feb 28, 2026Updated last week
- ☆84Nov 25, 2025Updated 3 months ago
- ☆10Feb 21, 2020Updated 6 years ago
- Solutions for Andrej Karpathy's "Neural Networks: Zero to Hero" course☆11Mar 3, 2024Updated 2 years ago
- What exactly are the non-canonical amino acids in the Rosetta database folder?☆12Feb 16, 2020Updated 6 years ago
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆11Apr 14, 2022Updated 3 years ago
- All the project files related to the development of an Arduino based autonomous mobile robot for UOM's EN2532 - Robot Design and Competit…☆11May 11, 2022Updated 3 years ago
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 4 months ago
- The Molecular Dynamics teaching code.☆12Oct 17, 2025Updated 4 months ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Sep 6, 2016Updated 9 years ago
- MMseqs2 app to run on your workstation or servers☆105Updated this week
- ☆181Oct 27, 2021Updated 4 years ago