OPUS-MaLab / opus_rota4
OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors
☆11Updated 2 years ago
Alternatives and similar repositories for opus_rota4:
Users that are interested in opus_rota4 are comparing it to the libraries listed below
- a fast and accurate physical energy function extended from EvoEF for protein sequence design☆25Updated last year
- ☆26Updated 7 months ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- Calculate the RMSD between two protein structures☆12Updated 2 years ago
- Some scripts that I keep using over and over.☆18Updated 3 months ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆7Updated last year
- DLPacker☆31Updated 7 months ago
- ☆17Updated last year
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆12Updated last year
- ☆27Updated 2 years ago
- ☆20Updated 2 years ago
- ☆29Updated 4 years ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆40Updated last year
- a universal framework for computational protein design☆35Updated last year
- ☆19Updated 2 years ago
- DISTEVAL: A web-server for evaluating protein inter-residue distances☆18Updated 3 years ago
- ☆31Updated last year
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆25Updated 5 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆11Updated 4 years ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆22Updated last year
- Repo contains source code of the SurfaceID paper☆21Updated last year
- ☆20Updated 2 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16Updated 3 years ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆16Updated 3 months ago
- Computationally Restoring the Potency of a Clinical Antibody☆17Updated last year
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆19Updated 5 years ago
- an ultra-fast and accurate program for deterministic protein sidechain packing☆29Updated last month
- PyDock Tutorial☆30Updated 6 years ago
- scripts to find PBD structures for cancer driver proteins☆31Updated last month