Lattice-Automation / primers

Related projects ⓘ

Alternatives and complementary repositories for primers

• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆92Updated 2 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆37Updated 5 years ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆69Updated this week
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆24Updated 2 weeks ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆19Updated this week
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 9 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆65Updated last week
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆52Updated last year
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆136Updated last week
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆32Updated 2 years ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆108Updated 7 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆31Updated last month
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆65Updated last week
• hsalis / Ribosome-Binding-Site-Calculator-v1.0
  The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…
  ☆52Updated 9 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆83Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆30Updated 8 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆44Updated 3 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆33Updated 2 years ago
• Devil625 / Codon_Optimization
  https://www.nature.com/articles/s41598-020-74091-z#Tab1
  ☆38Updated 8 months ago
• ntranoslab / esm-variants
  ☆67Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆61Updated 7 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆84Updated 3 months ago
• IsaacLuo / SnapGeneFileReader
  A Python project to read and write Snapgene *.dna into dict, json, and biopython object.
  ☆36Updated 4 years ago
• OrensteinLab / DeCoDe
  Degenerate Codon Design
  ☆13Updated 4 years ago
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆33Updated last week
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆60Updated last year
• Edinburgh-Genome-Foundry / Plateo
  🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
  ☆41Updated last month
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆39Updated last month
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆22Updated last year
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆53Updated 9 months ago