churchmanlab / FIDDLE
functional genomic data integration
☆10Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for FIDDLE
- ☆30Updated 4 years ago
- ☆31Updated 3 years ago
- Fast and accurate protein structure prediction☆49Updated last year
- Visually explore covariation in protein families☆37Updated 4 years ago
- ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers☆16Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 6 months ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆28Updated 2 years ago
- Protein design and variant prediction using autoregressive generative models☆93Updated 9 months ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆54Updated 3 years ago
- KinDEL is a large DNA-encoded library dataset containing two kinase targets (DDR1 and MAPK14) for benchmarking machine learning models.☆14Updated last month
- Automated omics-scale protein modeling and simulation setup.☆52Updated 3 years ago
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆11Updated 2 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆34Updated 3 years ago
- Convert PDB residues to their Uniprot equivalents☆15Updated 4 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆60Updated 2 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 5 years ago
- The python implementation of the MMTF API, decoder and encoder.☆46Updated 2 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆38Updated last year
- De novo protein structure prediction using iteratively predicted structural constraints☆55Updated 2 years ago
- Reimplementation of the UniRep protein featurization model.☆104Updated 2 months ago
- ☆20Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆27Updated last year
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- Interpretable genotype-phenotype landscape modeling☆35Updated 11 months ago
- Analysis and figure code from Alley et al. 2019.☆58Updated last year
- ☆35Updated 5 months ago
- This repo contains the results data for Adaptyv Bio’s EGFR Protein Design Competition.☆28Updated 3 weeks ago
- Code for our paper "Protein sequence design with a learned potential"☆34Updated 3 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆33Updated 4 years ago