Alternatives and similar repositories for FIDDLE

Users that are interested in FIDDLE are comparing it to the libraries listed below

• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆107Updated 11 months ago
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆35Updated last year
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆87Updated 2 months ago
• sbl-sdsc / mmtf-pyspark
  Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
  ☆68Updated 2 years ago
• sokrypton / seqmodels
  ☆33Updated this week
• Genentech / beignet
  A standard library for biological research.
  ☆28Updated last week
• allydunham / aa_subtypes
  Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
  ☆11Updated 3 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• normandavey / ProcessedAlphafold
  ☆31Updated 4 years ago
• morrislab / mRNABench
  Collection of mRNA benchmarks
  ☆27Updated this week
• mgalardini / pdb2uniprot
  Convert PDB residues to their Uniprot equivalents
  ☆17Updated 5 years ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆67Updated 2 years ago
• twoXes / awesome-structural-bioinformatics
  Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…
  ☆72Updated 2 years ago
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆40Updated 5 months ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• jgreener64 / pdb-benchmarks
  Benchmarking common tasks on proteins in various languages and packages
  ☆42Updated 4 years ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆109Updated last year
• aqlaboratory / pnerf
  ☆36Updated 6 years ago
• soedinglab / CCMgen
  ☆20Updated 4 years ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated last year
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• modernatx / seqlike
  Unified biological sequence manipulation in Python
  ☆207Updated last year
• spetti / SMURF
  ☆133Updated 2 years ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆53Updated 9 months ago
• debbiemarkslab / EVzoom
  Visually explore covariation in protein families
  ☆38Updated 5 years ago
• debbiemarkslab / variational-synthesis
  Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…
  ☆34Updated 3 years ago
• pybel / pybel
  🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
  ☆137Updated last year
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆48Updated 2 months ago