Alternatives and similar repositories for FIDDLE

Users that are interested in FIDDLE are comparing it to the libraries listed below

• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆108Updated last year
• sokrypton / seqmodels
  ☆33Updated 4 months ago
• sbl-sdsc / mmtf-pyspark
  Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
  ☆68Updated 2 years ago
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆36Updated 2 years ago
• morrislab / mRNABench
  Collection of mRNA benchmarks
  ☆46Updated last month
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated last month
• twoXes / awesome-structural-bioinformatics
  Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…
  ☆76Updated 2 years ago
• mgalardini / pdb2uniprot
  Convert PDB residues to their Uniprot equivalents
  ☆17Updated 5 years ago
• debbiemarkslab / EVzoom
  Visually explore covariation in protein families
  ☆40Updated 6 years ago
• soedinglab / CCMgen
  ☆20Updated 4 years ago
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆41Updated 11 months ago
• Genentech / beignet
  A standard library for biological research.
  ☆32Updated 5 months ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆67Updated 3 years ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆119Updated 2 years ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 5 years ago
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated 10 months ago
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆100Updated last week
• churchlab / Generative_AAV_design
  Code and Data for Generative modeling for AAV design
  ☆10Updated 2 years ago
• modernatx / seqlike
  Unified biological sequence manipulation in Python
  ☆208Updated last year
• rcsb / mmtf-python
  The python implementation of the MMTF API, decoder and encoder.
  ☆46Updated 3 years ago
• pengzhangzhi / faplm
  FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
  ☆163Updated 6 months ago
• allydunham / aa_subtypes
  Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
  ☆10Updated 3 years ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆58Updated 3 years ago
• eternagame / EternaBench
  Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
  ☆17Updated 3 years ago
• Future-House / BixBench
  Benchmark for LLM-based Agents in Computational Biology
  ☆69Updated 4 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆97Updated 2 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆59Updated last year
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆60Updated 4 years ago
• etowahadams / interprot
  [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.
  ☆123Updated 3 weeks ago