Alternatives and similar repositories for FIDDLE

Users that are interested in FIDDLE are comparing it to the libraries listed below

• sbl-sdsc / mmtf-pyspark
  Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
  ☆67Updated 2 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated last year
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆35Updated last year
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆108Updated last year
• twoXes / awesome-structural-bioinformatics
  Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…
  ☆73Updated 2 years ago
• sokrypton / seqmodels
  ☆32Updated last month
• normandavey / ProcessedAlphafold
  ☆31Updated 4 years ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆65Updated 3 years ago
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆92Updated 4 months ago
• mgalardini / pdb2uniprot
  Convert PDB residues to their Uniprot equivalents
  ☆17Updated 5 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆41Updated 7 months ago
• pybel / pybel
  🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
  ☆137Updated last year
• jgreener64 / pdb-benchmarks
  Benchmarking common tasks on proteins in various languages and packages
  ☆42Updated 4 years ago
• modernatx / seqlike
  Unified biological sequence manipulation in Python
  ☆207Updated last year
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆58Updated 2 years ago
• debbiemarkslab / EVzoom
  Visually explore covariation in protein families
  ☆39Updated 5 years ago
• Pappulab / localCIDER
  localCIDER - sequence analysis tool for disordered protein sequences
  ☆25Updated 2 years ago
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated 6 months ago
• rcsb / rcsb-saguaro-3d
  ☆31Updated 2 weeks ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆62Updated 5 months ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆114Updated last year
• allydunham / aa_subtypes
  Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
  ☆11Updated 3 years ago
• spetti / SMURF
  ☆132Updated 3 years ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• rcsb / mmtf-python
  The python implementation of the MMTF API, decoder and encoder.
  ☆46Updated 3 years ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆241Updated 3 years ago
• Genentech / beignet
  A standard library for biological research.
  ☆29Updated last month