Alternatives and similar repositories for pydock_tutorial

Users that are interested in pydock_tutorial are comparing it to the libraries listed below

• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 3 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆58Updated last month
• lcbc-epfl / metal-site-prediction
  ☆41Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 3 months ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆43Updated 2 years ago
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆48Updated last year
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆37Updated 2 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆70Updated this week
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆37Updated 4 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆53Updated 2 months ago
• dina-lab3D / CombFold
  ☆87Updated last year
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆64Updated last year
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆32Updated 3 years ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆36Updated 3 weeks ago
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆32Updated last month
• Boehringer-Ingelheim / pyPept
  pyPept: a python library to generate atomistic 2D and 3D representations of peptides
  ☆79Updated last week
• sarisabban / RosettaDesign
  RosettaDesign using PyRosetta
  ☆32Updated 6 years ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆35Updated 2 years ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆56Updated 8 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆84Updated 4 months ago
• Jfeldman34 / AF3Complex
  ☆47Updated 4 months ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆55Updated last month
• harryjubb / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆81Updated 3 years ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆117Updated 6 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆24Updated last year
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆50Updated 4 years ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆66Updated 3 months ago
• Protein-Engineering-Framework / PyPEF
  PyPEF – Pythonic Protein Engineering Framework
  ☆24Updated last month