hesther / enzymemapLinks
Python package to atom map, correct and suggest enzymatic reactions
☆40Updated last year
Alternatives and similar repositories for enzymemap
Users that are interested in enzymemap are comparing it to the libraries listed below
Sorting:
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆38Updated 4 years ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆35Updated last month
- Physical energy function for protein sequence design☆31Updated 2 years ago
- Efficient manipulation of protein structures in Python☆55Updated 9 months ago
- Machine learning prediction of enzyme optimum pH☆44Updated 3 months ago
- ☆20Updated last year
- ☆38Updated 10 months ago
- Ultra-fast in-silico structure mutation☆34Updated 3 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆40Updated 2 months ago
- ☆26Updated this week
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated last month
- The official codebase of peptidy, a peptide processing tool for machine learning.☆32Updated 3 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆57Updated 2 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆63Updated 8 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆68Updated 11 months ago
- pyFoldX: python bindings for FoldX.☆48Updated 3 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆42Updated 2 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated 2 months ago
- Graph Network for protein-protein interface including language model features☆32Updated last year
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆45Updated 3 weeks ago
- A Unified Approach to Protein Engineering☆42Updated last year
- Extension of ThermoMPNN for double mutant predictions☆41Updated last week
- ☆73Updated 10 months ago
- Python package to manage protein structures and their annotations☆43Updated last year
- Structure prediction of alternative protein conformations☆76Updated 5 months ago
- Code for deep learning guided design of dynamic proteins☆30Updated last year
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆73Updated 11 months ago
- ☆70Updated 4 months ago
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆85Updated last week
- Some scripts that I keep using over and over.☆19Updated last month