Alternatives and similar repositories for protein_holography

Users that are interested in protein_holography are comparing it to the libraries listed below

• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆52Updated 3 weeks ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆52Updated 3 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 2 months ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆23Updated last year
• AbSciBio / igdesign
  ☆45Updated 8 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• hefeda / PGP
  ☆42Updated 3 weeks ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated last month
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆65Updated 9 months ago
• seanrjohnson / protein_gibbs_sampler
  Gibbs sampling for generating protein sequences
  ☆56Updated 8 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆41Updated 3 months ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆48Updated 2 months ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆25Updated 6 months ago
• regeneron-mpds / propermab
  ☆35Updated 5 months ago
• csi-greifflab / developability_profiling
  ☆25Updated 3 weeks ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆51Updated 7 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆65Updated last month
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆42Updated 2 weeks ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆65Updated 2 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆69Updated last year
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆21Updated 2 years ago
• Kuhlman-Lab / evopro
  ☆87Updated last month
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated 10 months ago
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆34Updated last month
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• bene837 / af2seq
  ☆44Updated last year
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆53Updated 5 months ago
• idlutz / protein-backbone-MCTS
  ☆49Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆84Updated 3 months ago