StatPhysBio / protein_holography
Code for holographic machine learning of proteins
☆22Updated 4 months ago
Alternatives and similar repositories for protein_holography:
Users that are interested in protein_holography are comparing it to the libraries listed below
- ☆43Updated 6 months ago
- pyFoldX: python bindings for FoldX.☆44Updated 3 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆65Updated 6 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆51Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆38Updated 4 months ago
- ☆74Updated last week
- Efficient manipulation of protein structures in Python☆52Updated 4 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆27Updated 9 months ago
- ☆62Updated this week
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- Code for humanization of antibody and nanobody☆37Updated 3 months ago
- ☆49Updated 9 months ago
- Extension of ThermoMPNN for double mutant predictions☆28Updated last week
- Fast deep learning methods for large-scale protein-protein interaction screening☆35Updated 5 months ago
- dMaSIF implementation for google colab☆31Updated 2 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆34Updated 3 months ago
- ☆80Updated 6 months ago
- A domain parser for Alphafold models☆34Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated 2 months ago
- Ultra-fast in-silico structure mutation☆32Updated 2 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 8 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆42Updated 2 weeks ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion.☆38Updated 3 weeks ago
- Inference code for Bio-Inspired Antibody Language Model☆24Updated 6 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆53Updated last month
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆53Updated this week
- Bioinformatics and Cheminformatics protocols for peptide analysis☆40Updated 2 years ago
- ☆38Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- ☆34Updated 2 months ago