Code for holographic machine learning of proteins
☆25Oct 29, 2024Updated last year
Alternatives and similar repositories for protein_holography
Users that are interested in protein_holography are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Apr 2, 2024Updated 2 years ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago
- Building more accurate protein structures from backbone torsion angles☆16Mar 21, 2025Updated last year
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆20Jan 17, 2024Updated 2 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆22Jul 20, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- protein backbone refinement☆16Sep 12, 2024Updated last year
- ☆10Apr 1, 2022Updated 4 years ago
- This repository enables inference and sampling for Dyno Psi-1, a de novo miniprotein binder design model.☆24Aug 25, 2026Updated last week
- Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder☆18Aug 3, 2026Updated 3 weeks ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆62Oct 28, 2025Updated 10 months ago
- A collection of *fold* tools☆303Aug 8, 2025Updated last year
- ☆11Apr 25, 2021Updated 5 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Prediction and re-engineering of the cofactor specificity of Rossmann-fold proteins☆15Nov 5, 2023Updated 2 years ago
- ☆11Mar 31, 2026Updated 5 months ago
- Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)☆38Feb 17, 2025Updated last year
- EasyPQP: Simple library generation for OpenSWATH☆11Apr 21, 2026Updated 4 months ago
- ☆44Aug 29, 2025Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- ☆22Sep 11, 2023Updated 2 years ago
- A flow matching model for generating conformational ensembles of protein backbones.☆50May 22, 2026Updated 3 months ago
- ☆27May 16, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Rifdock Library for Conformational Search☆177May 16, 2024Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆36Nov 18, 2023Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆81Sep 8, 2023Updated 2 years ago
- ☆11Aug 3, 2023Updated 3 years ago
- ☆15Mar 28, 2025Updated last year
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆38Aug 18, 2023Updated 3 years ago
- ☆20Jun 13, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An accurate and efficient protein sequence design approach☆27Mar 16, 2025Updated last year
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆32Feb 16, 2026Updated 6 months ago
- ☆16Dec 10, 2024Updated last year
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 4 months ago
- ☆18Dec 22, 2017Updated 8 years ago
- diffusion model for protein sequence generation☆51Feb 18, 2023Updated 3 years ago
- ☆18Mar 13, 2024Updated 2 years ago