Alternatives and similar repositories for bacmman

Users that are interested in bacmman are comparing it to the libraries listed below

• UU-cellbiology / ComDet
  ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)
  ☆19Updated 4 months ago
• jdeschamps / EMU
  A Micro-Manager plugin that loads easily reconfigurable user interfaces.
  ☆11Updated 2 years ago
• imaris / ImarisWriter
  ☆38Updated last year
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆34Updated last year
• MicroscopeAutoPilot / autopilot
  AutoPilot library
  ☆15Updated 8 years ago
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆17Updated 2 months ago
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆12Updated last year
• nimwegenLab / MiM_NikonTi
  Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.
  ☆22Updated last year
• deepimagej / python4deepimagej
  ☆14Updated 5 years ago
• AndrewGYork / high_na_single_objective_lightsheet
  Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…
  ☆22Updated last year
• ZhuangLab / storm-control
  Microscope control software
  ☆68Updated 8 months ago
• hdeter / CellTracking
  Python and ImageJ scripts designed to track single cells and analyze fluorescence
  ☆15Updated 3 years ago
• micro-manager / futureMMCore
  Place to discuss the future design of a universal microscope hardware interface
  ☆15Updated 4 years ago
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆60Updated 5 months ago
• zeiss-microscopy / OAD
  Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…
  ☆153Updated 2 weeks ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆69Updated last month
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆33Updated 4 years ago
• mesoSPIM / mesoSPIM-control
  Image acquisition software for mesoSPIM light-sheet microscopes.
  ☆44Updated this week
• fiji / SPIM_Registration
  Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher
  ☆23Updated last year
• hammerlab / flowdec
  TensorFlow Deconvolution for Microscopy Data
  ☆91Updated 3 years ago
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆62Updated 7 months ago
• saalfeldlab / paintera
  ☆110Updated last month
• ZEISS / czicompress
  Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents
  ☆24Updated last week
• haesleinhuepf / imagejmacromarkdown
  Generate markdown notebooks from ImageJ Macro
  ☆26Updated 4 years ago
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆22Updated 5 years ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆51Updated 2 years ago
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆40Updated 6 months ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆20Updated 2 years ago
• royerlab / daxi
  High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy
  ☆29Updated last year
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆42Updated 4 years ago