☆13Oct 20, 2026Updated this week
Alternatives and similar repositories for mAIcrobe
Users that are interested in mAIcrobe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accurate, generalizable and user-friendly 3D cell segmentation☆18Oct 1, 2026Updated 3 weeks ago
- ☆12May 26, 2026Updated 5 months ago
- Tiled processing of arbitrarily large images — any image, any function.☆18Updated this week
- Image registration and ROI matching for microscopy images using nuclei constellations☆17Oct 16, 2026Updated last week
- Guides and code for 3D nuclear instance segmentation☆25Dec 2, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A recast of cell segmentation models built on the Burn deep learning framework.☆25Updated this week
- ☆14Jan 27, 2024Updated 2 years ago
- Higher-Order Cell Tracking (HOCT)☆26Oct 16, 2026Updated last week
- Interprocess environment manager 🧊☆19Oct 20, 2026Updated last week
- Deploy image processing algorithms in FastAPI servers and easily run them in Napari, QuPath, and more.☆11Updated this week
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆21Jun 16, 2025Updated last year
- ☆13Jun 18, 2026Updated 4 months ago
- Java implementation of Appose ☕☆15Oct 20, 2026Updated last week
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆80Aug 25, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- ☆17Aug 3, 2026Updated 2 months ago
- Accelerated CellStitch for 3D labeling of anisotropic image stacks☆15Mar 1, 2026Updated 7 months ago
- An ImageJ/R pipeline for filopodia dynamics analysis☆11Feb 5, 2024Updated 2 years ago
- The Java library to run Deep Learning models☆37Updated this week
- Visualize the proportion of results for a given PubMed search over time and compare searches to one another!☆16Jun 10, 2026Updated 4 months ago
- napari plugin for trackastra☆19Jul 16, 2026Updated 3 months ago
- Python package to export tensorflow models as DeepImageJ bundled models☆17Aug 10, 2022Updated 4 years ago
- Rxiv-Maker is a GitHub-native framework that converts markdown into a publication-ready PDF. It automates scientific preprint generation …☆45Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆17Jun 2, 2025Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated 2 years ago
- A relabeling tool for tiled segmentation with Dask☆18Sep 24, 2024Updated 2 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 10 months ago
- ☆15Apr 1, 2026Updated 6 months ago
- 7 sessions workshop about bioimage analysis☆14Nov 24, 2025Updated 11 months ago
- Automated batch processing of cell and tissue microscopy image data in Napari☆23Updated this week
- Cytomine client and utilities in Python☆24Oct 1, 2025Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆51Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 4 months ago
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆49Jun 7, 2026Updated 4 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆59Jun 30, 2025Updated last year
- browsing large volumetric data and shapes☆24Oct 15, 2026Updated last week
- An open-source tool for characterizing PSF and FWHM measurements from light-microscopic 2D and 3D images of microspheres.☆19Oct 4, 2026Updated 3 weeks ago
- Modern Bio-Formats wrapper with clean lazy Python API☆24Jun 25, 2026Updated 4 months ago
- A high content analysis method to study skeletal muscle☆12Apr 26, 2024Updated 2 years ago