jklughammer / RefFreeDMALinks
Reference Genome Independent Differential DNA Methylation Analysis
☆11Updated 4 years ago
Alternatives and similar repositories for RefFreeDMA
Users that are interested in RefFreeDMA are comparing it to the libraries listed below
Sorting:
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆63Updated 7 months ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- ☆75Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated this week
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆111Updated 4 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- BISulfite-seq CUI Toolkit☆70Updated 4 months ago
- Publication quality NGS track plotting☆117Updated 4 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆30Updated last week
- A toolset for profiling alternative splicing events in RNA-Seq data.☆87Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆57Updated 4 months ago
- nucleosome calling using ATAC-seq☆110Updated 5 years ago
- ☆32Updated 7 years ago
- Genomic Association Tester☆35Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated 2 years ago
- Tools for analyzing DNA methylation data☆44Updated last month
- Allele-specific alignment sorting☆61Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆45Updated 8 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆116Updated last month