johnmcculloch / JAMS_BWLinks
Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)
☆24Updated 2 weeks ago
Alternatives and similar repositories for JAMS_BW
Users that are interested in JAMS_BW are comparing it to the libraries listed below
Sorting:
- A catalogue of available long read sequencing data analysis tools☆79Updated 3 weeks ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 8 months ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 10 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 10 months ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- Nanopore data analysis in R☆40Updated 2 years ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 6 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Maximum likelihood demultiplexing☆47Updated 8 months ago
- ☆63Updated 4 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆30Updated 2 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 9 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- A reference viral database (RVDB)☆26Updated 6 years ago
- ☆23Updated last week
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- ☆32Updated 2 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated last month
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Merging paired-end reads and removing adapters☆46Updated 3 weeks ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated last month