Alternatives and similar repositories for BioGraph

Users that are interested in BioGraph are comparing it to the libraries listed below

• AstraZeneca / StarGazer
  StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…
  ☆34Updated 2 years ago
• wikipathways / pywikipathways
  Python Client Package for WikiPathways
  ☆23Updated 2 months ago
• cusbg / MolArt
  MOLeculAR structure annoTator
  ☆33Updated last year
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆37Updated 4 years ago
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆34Updated 3 years ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆32Updated last year
• natacourby / Disease_ontologies_for_knowledge_graphs
  Software "Disease_ontologies_for_knowledge_graphs" - a knowledge base solution that uses Grakn core and disease ontologies cross-referenc…
  ☆21Updated 4 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆29Updated last year
• simomarsili / pcdhit
  Python interface to cd-hit
  ☆10Updated 6 years ago
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• mmagnus / awesome-rna-3D-tools
  awesome tools for RNA
  ☆17Updated 3 years ago
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆66Updated last year
• 310-ai / lib310
  lib310 python package
  ☆23Updated 2 years ago
• EnzymeML / PyEnzyme
  🧬 - Data management and modeling framework based on EnzymeML.
  ☆26Updated 3 weeks ago
• ewbell94 / PEPPI
  Pipeline for protein-protein interaction prediction
  ☆27Updated 3 years ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆60Updated last week
• amyxlu / CPCProt
  Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
  ☆30Updated 6 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆59Updated last year
• rcsb / rcsb-saguaro-3d
  ☆33Updated 4 months ago
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆27Updated 2 years ago
• adaptyvbio / egfr_competition_1
  This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.
  ☆34Updated last year
• jgreener64 / pdb-benchmarks
  Benchmarking common tasks on proteins in various languages and packages
  ☆42Updated 5 years ago
• AlexanderKroll / SPOT
  ☆12Updated last year
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆41Updated 11 months ago
• tyo-nu / MINE-Database
  Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
  ☆20Updated last year
• esacinc / PDC-Public
  The public repository for the Proteomic Data Commons UI and APIs
  ☆17Updated last month
• eternagame / EternaBench
  Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
  ☆17Updated 3 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• sdecesco / targetDB
  TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available ab…
  ☆33Updated last year