Alternatives and similar repositories for coding_exercise_TCGA_infiltration:

Users that are interested in coding_exercise_TCGA_infiltration are comparing it to the libraries listed below

• liulab-dfci / bioinfo-combio
  The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
  ☆89Updated 2 years ago
• evanpeikon / bash_fundamentals
  Introduction to Bash for bioinformatics
  ☆36Updated 5 months ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆48Updated 2 weeks ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆63Updated 11 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• evanpeikon / math_for_compbio
  This repository contains math tutorials I created for Bioinformatics and Computational Biology.
  ☆83Updated 5 months ago
• crazyhottommy / machine-learning-resource
  ☆74Updated last month
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆42Updated 2 years ago
• crazyhottommy / compbio_resources_chatomics
  ☆26Updated last year
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆119Updated 2 years ago
• omgenomics / bio-data-zoo
  Example genomics data for tool developers
  ☆108Updated 6 months ago
• evanpeikon / Python_Fundamentals_Biology
  Python Fundamentals for Biologists
  ☆21Updated 2 months ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆95Updated 2 months ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆79Updated last month
• hamidghaedi / RNA-seq-differential-expression
  Differential gene expression analysis on RNA-seq data
  ☆11Updated 9 months ago
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆54Updated last year
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆72Updated this week
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆88Updated last year
• hbc / NGS_Data_Analysis_Course
  ☆23Updated 8 years ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆107Updated last month
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆102Updated 3 months ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data
  ☆97Updated this week
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆66Updated this week
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆48Updated 5 years ago
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆63Updated 3 weeks ago
• gatk-workflows / gatk4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
  ☆72Updated 3 years ago
• hbctraining / main
  ☆52Updated last week
• raynamharris / Shell_Intro_for_Bioinformatics_STG
  Intro to Shell for Bioinformatics - with STG examples
  ☆28Updated 8 years ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆41Updated 2 months ago
• evanpeikon / functional_enrichment_analysis
  A DIY guide to gene ontology, pathway, and gene set enrichment analysis
  ☆20Updated 5 months ago