Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.
☆43Aug 28, 2025Updated 7 months ago
Alternatives and similar repositories for py_pcha
Users that are interested in py_pcha are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Matlab package to perform Pareto Task Inference (ParTI), which infers tasks from high-dimensional datasets.☆15Jan 21, 2020Updated 6 years ago
- Library for generating various random variables☆14Apr 8, 2026Updated last week
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆33Jul 27, 2020Updated 5 years ago
- Archetypal Analysis network (AAnet)☆41Jan 30, 2025Updated last year
- (1) Input a network. (2) Style it. (3) Download the result.☆28Feb 13, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Single-cell archetypal analysis neural network☆16May 27, 2022Updated 3 years ago
- TensorFlow-Implementation of Deep Archetypal Analysis☆12Aug 4, 2021Updated 4 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- pCMF R package☆14Apr 16, 2019Updated 6 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆17Feb 8, 2019Updated 7 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 4 months ago
- Scikit-learn compatible package for archetypal analysis.☆28Mar 18, 2026Updated 3 weeks ago
- Python code for "Fast Bayesian nonnegative matrix factorisation and tri-factorisation", presented at NIPS 2016 Workshop on Advances in Ap…☆20Jun 10, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Fast prototyping of infectious-disease models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochasti…☆34Oct 6, 2025Updated 6 months ago
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Dec 2, 2025Updated 4 months ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- DNA-D2S: a systematic error simulation Model for DNA Data Storage channel☆12Feb 14, 2022Updated 4 years ago
- Geometry-preserving random sampling☆96Oct 29, 2024Updated last year
- generalized principal component analysis (GLM-PCA) implemented in python☆63Feb 1, 2021Updated 5 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆24Feb 24, 2025Updated last year
- DEPRECATED Tools for manipulating cell expression format (CEF) files☆12Oct 10, 2017Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12Jul 6, 2023Updated 2 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated last year
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated 8 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- download and prepare a pdb file for docking wth Vina-flavoured algorithms☆13Oct 11, 2021Updated 4 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- ☆27Apr 15, 2025Updated last year
- Fast motif matching in R☆47Jan 24, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Sep 21, 2021Updated 4 years ago
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data☆13Apr 1, 2024Updated 2 years ago
- Quick pre-QC knee plots for barcode based scRNAseq data☆12Dec 8, 2018Updated 7 years ago
- ☆13Jun 4, 2023Updated 2 years ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Oct 13, 2019Updated 6 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆67Mar 31, 2026Updated 2 weeks ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆38Aug 16, 2023Updated 2 years ago