ulfaslak / py_pchaLinks
Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.
☆40Updated 3 weeks ago
Alternatives and similar repositories for py_pcha
Users that are interested in py_pcha are comparing it to the libraries listed below
Sorting:
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 2 months ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Updated 5 years ago
- GrandPrix☆16Updated 6 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆56Updated 3 years ago
- The art of using t-SNE for single-cell transcriptomics☆127Updated 9 months ago
- Branching Gaussian process☆30Updated 2 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- Deep learning for single-cell transcript counts☆89Updated 6 months ago
- ☆100Updated 11 months ago
- ☆29Updated 2 years ago
- Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing☆24Updated 2 months ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆119Updated 3 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 8 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆105Updated 6 years ago
- pCMF R package☆14Updated 6 years ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- ☆48Updated 6 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 5 years ago
- Yet Another Motif Discovery Algorithm☆53Updated 6 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 8 years ago