AprilYuge / scAAnetLinks
Single-cell archetypal analysis neural network
☆14Updated 3 years ago
Alternatives and similar repositories for scAAnet
Users that are interested in scAAnet are comparing it to the libraries listed below
Sorting:
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- Single cell omics biology annotations☆51Updated 2 months ago
- cTPnet Package☆25Updated 2 years ago
- ☆47Updated last year
- Reproducing result from the paper☆34Updated 4 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆21Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆27Updated 2 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 4 months ago
- ☆21Updated 3 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆42Updated 9 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- ACTIONet single-cell analysis framework☆42Updated 9 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- ☆41Updated 2 weeks ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆112Updated last year
- ☆44Updated 3 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆31Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆82Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆72Updated 4 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- ☆26Updated last year
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆21Updated last month
- spatial transcriptome, single cell☆68Updated 2 years ago