AprilYuge / scAAnetLinks
Single-cell archetypal analysis neural network
☆15Updated 3 years ago
Alternatives and similar repositories for scAAnet
Users that are interested in scAAnet are comparing it to the libraries listed below
Sorting:
- Work with trained factor models in Python☆35Updated 11 months ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆30Updated 4 years ago
- ☆21Updated 3 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- Tutorials for multimodal omics data analysis☆17Updated 7 months ago
- ☆56Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆60Updated 4 years ago
- Notebook and examples related to La Manno and Gyllborg et al. 2016☆16Updated 8 years ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆20Updated 2 years ago
- ACTIONet single-cell analysis framework☆42Updated last year
- ☆48Updated 7 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- A statistical simulator for rational scRNA-seq experimental design☆12Updated 4 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated last month
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- Reproducing result from the paper☆34Updated 4 years ago
- Immune Profiling of Atherosclerotic Plaques Identifies☆10Updated 2 years ago
- cTPnet Package☆25Updated 3 years ago
- Unified access to several second-generation deconvolution methods☆78Updated last month
- ☆18Updated 3 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆80Updated 3 years ago
- SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.☆88Updated 2 years ago