AprilYuge / scAAnetLinks
Single-cell archetypal analysis neural network
☆15Updated 3 years ago
Alternatives and similar repositories for scAAnet
Users that are interested in scAAnet are comparing it to the libraries listed below
Sorting:
- Reproducing result from the paper☆34Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 5 years ago
- Tutorials for multimodal omics data analysis☆18Updated 9 months ago
- ☆58Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆69Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 10 months ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 2 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 4 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- ☆18Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- Work with trained factor models in Python☆36Updated last year
- Notebook and examples related to La Manno and Gyllborg et al. 2016☆16Updated 8 years ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- ☆62Updated 4 years ago
- ☆43Updated 3 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆65Updated 5 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Updated 5 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Updated 6 months ago
- Unified access to several second-generation deconvolution methods☆88Updated last month
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- ☆65Updated 2 years ago