AprilYuge / scAAnet
Single-cell archetypal analysis neural network
☆13Updated 2 years ago
Related projects: ⓘ
- ☆45Updated 5 months ago
- Reproducing result from the paper☆33Updated 3 years ago
- ☆40Updated last week
- cTPnet Package☆23Updated 2 years ago
- ☆28Updated 10 months ago
- ☆26Updated 8 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 3 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆34Updated last week
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- Single cell omics biology annotations☆45Updated this week
- ☆19Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆24Updated 4 months ago
- Gene group activity utility functions for Scanpy☆49Updated last month
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆56Updated 4 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆52Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆20Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆39Updated this week
- Regulatory networks with Direct Information in python☆38Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆17Updated last month
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆36Updated 2 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆24Updated 2 years ago
- End-to-end analysis of spatial multi-omics data☆32Updated 3 weeks ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆27Updated 3 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated last year
- ACTIONet single-cell analysis framework☆36Updated this week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆30Updated 6 months ago
- SPATA Package for spatial gene expression analysis☆21Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆56Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆19Updated 3 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆31Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 4 months ago