vishakhpk / iter-extrapolationLinks
Repository for code and models for the paper "Extrapolative Controlled Sequence Generation via Iterative Refinement"
☆16Updated last year
Alternatives and similar repositories for iter-extrapolation
Users that are interested in iter-extrapolation are comparing it to the libraries listed below
Sorting:
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆12Updated 2 years ago
- Benchmark for Biophysical Sequence Optimization Algorithms☆20Updated 5 months ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆37Updated 2 years ago
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆29Updated 6 months ago
- ☆34Updated 5 months ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆74Updated 2 years ago
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆32Updated last month
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆16Updated 2 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆58Updated last year
- Protein Design with Guided Discrete Diffusion☆136Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"☆47Updated 7 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- This repository is the official implementation of Bidirectional Learning for Offline Infinite-width Model-based Optimization (NeurIPS 202…☆15Updated 2 years ago
- Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)☆71Updated last year
- ☆21Updated 3 weeks ago
- Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation☆14Updated 2 weeks ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆96Updated 2 years ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆27Updated last year
- Retrieved Sequence Augmentation for Protein Representation Learning☆53Updated last year
- Massively-Parallel Natural Extension of Reference Frame☆32Updated 2 years ago
- Code for 'On Pre-trained Language Models For Antibody'☆32Updated 2 years ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated 2 years ago
- Implementation of methods to sample from Boltzmann distributions☆20Updated 2 years ago
- Official implementation of "Learning the language of protein structures"☆39Updated 4 months ago
- Structured Multi-task Learning for Molecular Property Prediction, AISTATS'22 (https://proceedings.mlr.press/v151/liu22e.html)☆13Updated 3 years ago
- Code for RL-DIF☆16Updated 4 months ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- Official code release for Ambient Protein Diffusion☆26Updated 2 months ago