HeliXonProtein / proximal-exploration
PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"
☆36Updated last year
Alternatives and similar repositories for proximal-exploration:
Users that are interested in proximal-exploration are comparing it to the libraries listed below
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated 10 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆97Updated 6 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆70Updated 6 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆58Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆112Updated last month
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆64Updated this week
- Antibody-Antigen Docking and Affinity Benchmark☆71Updated 4 years ago
- ☆65Updated last year
- ☆106Updated 2 years ago
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆12Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆57Updated 11 months ago
- ☆87Updated 6 months ago
- Gibbs sampling for generating protein sequences☆55Updated 3 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆93Updated 8 months ago
- Aligning protein generative models with experimental fitness☆90Updated 6 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆74Updated 10 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 3 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆75Updated last year
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆28Updated 8 months ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆48Updated 3 years ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆54Updated last year
- Code for Fold2Seq paper from ICML 2021☆50Updated 2 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 10 months ago
- Directed evolution of proteins in sequence space with gradients☆84Updated 8 months ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆56Updated last year
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated last year
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆30Updated 3 months ago
- An evolutionary context-integrated deep learning framework for protein engineering☆63Updated 2 years ago