HeliXonProtein / proximal-exploration

Related projects: ⓘ

• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆30Updated 3 months ago
• seanrjohnson / protein_gibbs_sampler
  Gibbs sampling for generating protein sequences
  ☆46Updated last month
• pemami4911 / ppde
  Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"
  ☆10Updated last year
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆49Updated 7 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆78Updated 3 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆63Updated 2 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆46Updated 10 months ago
• luo-group / ConFit
  ☆23Updated last month
• IBM / fold2seq
  Code for Fold2Seq paper from ICML 2021
  ☆49Updated 2 years ago
• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆30Updated last year
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆59Updated last month
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆91Updated last year
• alex-hh / deep-protein-generation
  ☆55Updated last year
• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆20Updated last year
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. https…
  ☆60Updated this week
• melobio / EvoPlay
  ☆65Updated last year
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆52Updated 4 months ago
• Minys233 / Dynaformer
  ☆25Updated 2 months ago
• wengong-jin / DSMBind
  ☆73Updated 4 months ago
• LSSI-ETH / meta-learning-for-protein-engineering
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…
  ☆19Updated last month
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆56Updated 7 months ago
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆44Updated last year
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆35Updated last month
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆50Updated 3 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆47Updated 4 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆47Updated 5 months ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆65Updated 6 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆58Updated 2 months ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆22Updated 5 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆116Updated 11 months ago