Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"
☆13Jul 18, 2023Updated 2 years ago
Alternatives and similar repositories for ppde
Users that are interested in ppde are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Directed evolution of proteins in sequence space with gradients☆96Oct 18, 2025Updated 5 months ago
- ☆24Dec 2, 2024Updated last year
- Code base for "Evaluation of Machine Learning-Assisted Directed Evolution Across Diverse Combinatorial Landscapes"☆15Jun 19, 2025Updated 9 months ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Sep 18, 2025Updated 6 months ago
- ☆10Feb 22, 2023Updated 3 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆232Aug 7, 2025Updated 7 months ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆37Aug 7, 2023Updated 2 years ago
- ☆20May 14, 2025Updated 10 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆164Aug 24, 2023Updated 2 years ago
- A program fror inter-protein contact prediction from structures of interacting proteins☆20Jun 1, 2024Updated last year
- Code for Sufficient Input Subsets Paper☆14Mar 8, 2019Updated 7 years ago
- Tool for modelling the CDRs of antibodies☆50Jan 19, 2023Updated 3 years ago
- ☆15Sep 29, 2025Updated 5 months ago
- Open source code for AlphaFold.☆18Jun 9, 2024Updated last year
- ☆17Mar 2, 2023Updated 3 years ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated 11 months ago
- ☆10Mar 10, 2023Updated 3 years ago
- ☆19Nov 21, 2025Updated 4 months ago
- Template-based protein design with Raygun☆77Feb 7, 2026Updated last month
- Code for the combinatorial synthesis library variational auto-encoder (CSLVAE) as described in the paper, "An efficient graph generative …☆14Nov 17, 2023Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- This is a caffe implementation to visualize the learnt model☆10Jul 2, 2015Updated 10 years ago
- Protein Design with Guided Discrete Diffusion☆141Feb 21, 2024Updated 2 years ago
- ☆17May 20, 2025Updated 10 months ago
- [Neurips 2025] Official Implementation of ConfRover models☆22Feb 3, 2026Updated last month
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- This repository is the official implementation of Bidirectional Learning for Offline Infinite-width Model-based Optimization (NeurIPS 202…☆14Jan 19, 2023Updated 3 years ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Oct 24, 2023Updated 2 years ago
- ☆20Jun 10, 2024Updated last year
- ☆11Aug 26, 2024Updated last year
- Efficient evolution from protein language models☆221Aug 26, 2023Updated 2 years ago
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Jul 13, 2023Updated 2 years ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Sep 28, 2024Updated last year
- [ICLR 2022] Path integral sampler☆53Aug 21, 2023Updated 2 years ago
- Official code for paper: Conservative objective models are a special kind of contrastive divergence-based energy model☆14Aug 15, 2023Updated 2 years ago
- ☆16Dec 10, 2025Updated 3 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆61Apr 8, 2021Updated 4 years ago
- Repository for code and models for the paper "Extrapolative Controlled Sequence Generation via Iterative Refinement"☆16Mar 5, 2024Updated 2 years ago