Marco-Peg / GEPLinks
☆15Updated last year
Alternatives and similar repositories for GEP
Users that are interested in GEP are comparing it to the libraries listed below
Sorting:
- Implementation of Protein Invariant Point Packer (PIPPack)☆34Updated last year
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated 2 years ago
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆20Updated last year
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 11 months ago
- ☆19Updated 10 months ago
- ☆30Updated last year
- ☆20Updated 2 months ago
- ☆12Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆45Updated 6 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆43Updated 8 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆56Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆65Updated last year
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆46Updated last month
- Versatile human antibody sequence design☆18Updated 2 months ago
- Code for the paper "Learning to engineer protein flexibility".☆19Updated last month
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated last year
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated last year
- A 3D-equivariant neural network for protein structure accuracy estimation☆18Updated 2 years ago
- ☆33Updated last week
- Tool for modelling the CDRs of antibodies☆32Updated 2 years ago
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆38Updated last month
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 9 months ago
- A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files☆11Updated last year
- ☆23Updated 7 months ago
- ☆38Updated 10 months ago
- Code for humanization of antibody and nanobody☆49Updated 8 months ago
- Extension of ThermoMPNN for double mutant predictions☆41Updated last week
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year