Source codes and example scripts for chromatin tracing projects in Zhuang lab
☆29Jan 27, 2022Updated 4 years ago
Alternatives and similar repositories for Chromatin_Analysis_2020_cell
Users that are interested in Chromatin_Analysis_2020_cell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆23Sep 12, 2023Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 5 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 5 years ago
- A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.☆19Oct 10, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Jan 7, 2025Updated last year
- ☆27Apr 15, 2025Updated last year
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆44Jan 31, 2024Updated 2 years ago
- Analysis of Paired-Tag datasets☆44Jan 19, 2024Updated 2 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- MERFISH decoding software☆29Aug 16, 2025Updated last year
- ☆25May 14, 2021Updated 5 years ago
- Super-resolution chromatin tracing 2018☆19Nov 7, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Comparison of Hi-C Experiments using Structural Similarity.☆27Jul 18, 2023Updated 3 years ago
- Ontoclick - A web browser extension to turn highlighted text into a proper Ontology term.☆13Jun 2, 2023Updated 3 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Sep 5, 2019Updated 7 years ago
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- PHi-C: deciphering Hi-C data into polymer dynamics☆12Aug 12, 2020Updated 6 years ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 5 years ago
- a computational tool for analyzing single cell Hi-C data☆27Apr 23, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Simple library/pipeline to generate and handle Hi-C data.☆42Sep 14, 2026Updated 3 weeks ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆31Mar 15, 2024Updated 2 years ago
- ☆20Jun 8, 2023Updated 3 years ago
- Simple codes and lines to process 3C/Hi-C data☆18Oct 21, 2021Updated 4 years ago
- Extract data quickly from Juicebox via straw☆70Apr 6, 2025Updated last year
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 7 years ago
- ☆34Jul 20, 2018Updated 8 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆56May 20, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scripts to create cartoons of 3D genomes☆12Feb 27, 2024Updated 2 years ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- Single-cell Hi-C data analysis toolbox☆28Aug 13, 2021Updated 5 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- A Framework for Chromatin Architecture Data Processing, Handling and Analysis☆12Updated this week
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago