ZhuangLab / Chromatin_Analysis_2020_cellLinks
Source codes and example scripts for chromatin tracing projects in Zhuang lab
☆27Updated 3 years ago
Alternatives and similar repositories for Chromatin_Analysis_2020_cell
Users that are interested in Chromatin_Analysis_2020_cell are comparing it to the libraries listed below
Sorting:
- An interpretable deep-learning architecture of capsule networks for identifying cellular-type gene expression programs from single-cell R…☆26Updated 4 years ago
- Super-resolution chromatin tracing 2018☆18Updated 5 years ago
- ☆30Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆94Updated last year
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 5 years ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆92Updated 8 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 3 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- ☆27Updated 2 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- a computational tool for analyzing single cell Hi-C data☆26Updated last year
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆50Updated 9 months ago
- Scripts + resources for analyzing combinatorial Hi-C data☆31Updated 6 years ago
- ☆69Updated last week
- model-based understanding of single-cell CRISPR screening☆26Updated 11 months ago
- ☆26Updated 7 months ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆22Updated last week
- ☆45Updated last week
- Accurate and robust imputation of scRNA-seq data☆97Updated 6 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆63Updated last year
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Updated 7 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆92Updated last month
- Toolkit for single-cell DNA methylation analysis.☆43Updated this week
- scLearn:Learning for single cell assignment☆35Updated 11 months ago
- TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.☆41Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Reproducing result from the paper☆34Updated 4 years ago