nanoporetech / DTR-phage-pipeline
☆16Updated 11 months ago
Alternatives and similar repositories for DTR-phage-pipeline:
Users that are interested in DTR-phage-pipeline are comparing it to the libraries listed below
- Strain Resolution ON Graphs☆47Updated last year
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Updated 5 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 2 months ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆33Updated 5 months ago
- Prophage Activity Estimator☆26Updated 9 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆18Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- Find Unique genomic Regions☆29Updated last month
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆24Updated last week
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆17Updated 5 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 2 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- strain-level analysis tools☆34Updated 4 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆62Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- viralFlye pipeline☆18Updated 6 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- Gene-flank analysis tool☆27Updated 2 months ago
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 3 years ago
- ☆31Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago