Alternatives and similar repositories for DTR-phage-pipeline

Users that are interested in DTR-phage-pipeline are comparing it to the libraries listed below

• metagentools / MetaCoAG
  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
  ☆65Updated 11 months ago
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆36Updated 9 months ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆47Updated 2 years ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆50Updated 3 years ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆87Updated 4 months ago
• cai91 / GPD
  This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
  ☆19Updated 4 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆27Updated last year
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆52Updated 5 months ago
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆51Updated last year
• leylabmpi / Struo2
  Scalable creating/updating of metagenome profiling databases
  ☆62Updated 2 months ago
• SegataLab / viromeqc
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…
  ☆20Updated 2 years ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆43Updated last month
• bacpop / PopPIPE
  Population analysis PIPEline 🛠🧬
  ☆22Updated 4 months ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 3 weeks ago
• cmmr / EsViritu
  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
  ☆37Updated last week
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆33Updated last year
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆42Updated 4 years ago
• anuradhawick / MetaBCC-LR
  Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
  ☆20Updated last year
• apcamargo / ictv-mmseqs2-protein-database
  ☆31Updated 7 months ago
• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆21Updated 2 years ago
• edzuf / CrisprOpenDB
  ☆18Updated 4 years ago
• marbl / MetaCompass
  MetaCompass: Reference-guided Assembly of Metagenomes
  ☆38Updated last month
• Dmitry-Antipov / viralFlye
  viralFlye pipeline
  ☆18Updated last year
• rrwick / Assembly-Dereplicator
  A tool for removing redundant genomes from a set of assemblies
  ☆76Updated last week
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆65Updated 4 months ago
• CAMI-challenge / AMBER
  AMBER: Assessment of Metagenome BinnERs
  ☆31Updated 8 months ago
• dengzac / contig-extender
  ☆22Updated last year
• iqbal-lab-org / pling
  Plasmid analysis using rearrangement distances
  ☆45Updated 2 weeks ago
• linsalrob / sphae
  Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
  ☆38Updated this week
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year