Alternatives and similar repositories for EpiCoV_downloader

Users that are interested in EpiCoV_downloader are comparing it to the libraries listed below

• bioinf-mcb / gisaid-scrapper
  Scrapping tool for GISAID data regarding SARS-CoV-2
  ☆41Updated 2 years ago
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆57Updated 8 months ago
• BackofenLab / CRISPRidentify
  ☆30Updated 5 months ago
• MG-RAST / MG-RAST
  The MG-RAST Backend -- the API server
  ☆44Updated 2 years ago
• sepsis-omics / tutorials
  Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks
  ☆25Updated 11 months ago
• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆48Updated 2 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated last year
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated 2 years ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆78Updated 10 months ago
• chiulab / SURPI-plus-dist
  This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…
  ☆40Updated 5 years ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆67Updated 5 months ago
• PATRIC3 / mauve-viewer
  A Whole Genome Alignment Visualization Tool for the Web
  ☆44Updated 2 years ago
• paulstothard / cgview
  CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
  ☆44Updated 10 months ago
• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆75Updated 2 months ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆36Updated last week
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆36Updated 7 years ago
• biomendi / TRANSCRIPTOME-ASSEMBLY-PIPELINE
  A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).
  ☆27Updated 7 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated last month
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆68Updated 4 months ago
• pauloluniyi / VGEA
  VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.
  ☆20Updated 3 years ago
• ArifaKhanLab / RVDB
  A reference viral database (RVDB)
  ☆26Updated 6 years ago
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆31Updated last year
• hsinnan75 / GSAlign
  GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
  ☆58Updated last year
• indexofire / ndafp
  New version
  ☆33Updated 8 years ago
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated 2 years ago
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 3 years ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 4 months ago
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆51Updated last month