poeli / EpiCoV_downloaderLinks
Download all EpiCoV sequcnes from GISAID
☆32Updated 3 years ago
Alternatives and similar repositories for EpiCoV_downloader
Users that are interested in EpiCoV_downloader are comparing it to the libraries listed below
Sorting:
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 months ago
- Scrapping tool for GISAID data regarding SARS-CoV-2☆41Updated 2 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 3 months ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 3 months ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Merging paired-end reads and removing adapters☆46Updated last month
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆80Updated 3 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆91Updated 4 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 3 months ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Visualization of the pan-genome output by panX☆65Updated 5 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- ☆39Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Making bioinformatics fun again☆74Updated this week
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆59Updated 6 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- ☆46Updated 2 weeks ago
- seqfu - Sequece Fastx Utilities☆123Updated 2 months ago