ubiome-opensource / microbiome-data

Related projects ⓘ

Alternatives and complementary repositories for microbiome-data

• ubiome-opensource / microbiome-tools
  For tool creators to share their inventions that analyze, visualize, and make meaning of microbiome data.
  ☆66Updated 8 years ago
• richardsprague / uBiome
  useful tools for manipulating uBiome information
  ☆45Updated 6 years ago
• IGS / Chiron
  Tools and utilities for running Dockerized metagenomics tools in the Cloud
  ☆23Updated 5 years ago
• wurmlab / afra
  Genome Annotation for the Masses
  ☆36Updated 7 years ago
• jcvi / METAREP
  METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics
  ☆26Updated 11 years ago
• MG-RAST / pipeline
  The MG-RAST pipeline
  ☆24Updated last year
• homologus / Pandoras-Toolbox-for-Bioinformatics
  A collection of well-known bioinformatics programs.
  ☆25Updated 9 years ago
• katholt / plotTree
  ☆67Updated 8 years ago
• waldronlab / curatedMetagenomicDataCuration
  Sample Metadata Curation for curatedMetagenomicData
  ☆28Updated 4 months ago
• NCBI-Hackathons / rnaseqview
  RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon
  ☆36Updated 7 years ago
• biosails / pheniqs
  Fast and accurate sequence demultiplexing
  ☆27Updated 3 months ago
• smdabdoub / phylotoast
  Tools for phylogenetic data analysis including visualization and cluster-computing support.
  ☆13Updated 2 years ago
• danknights / mwas
  Perform microbiome-wide association studies with a variety of models
  ☆16Updated 7 years ago
• PathoScope / PathoScope
  Pathoscope: Species identification and strain attribution with unassembled sequencing data
  ☆54Updated 5 years ago
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 7 years ago
• dib-lab / genome-grist
  map Illumina metagenomes to genomes!
  ☆37Updated this week
• snayfach / IGGsearch
  Metagenomic species profiling with enhanced coverage of the human gut microbiome
  ☆24Updated 6 months ago
• jiwoongbio / FMAP
  Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
  ☆26Updated last year
• trvrb / dynamics-practical
  Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
  ☆32Updated 11 years ago
• pixushi / tempted
  ☆10Updated this week
• Victorian-Bioinformatics-Consortium / degust
  Deprecated : Use https://github.com/drpowell/degust
  ☆44Updated 7 years ago
• nickloman / massive-nanopore-silliness
  Very very long reads, indeed
  ☆13Updated 7 years ago
• cwarden45 / DTC_Scripts
  Scripts to Analyze DTC Sequencing and Genotyping Data (and some comparisons to Veritas WGS data)
  ☆19Updated 3 weeks ago
• knightlab-analyses / american-gut-analyses
  ☆14Updated 6 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 5 years ago
• clauswilke / proteinER
  Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"
  ☆13Updated 6 years ago
• biocore / emperor
  Emperor a tool for the analysis and visualization of large microbial ecology datasets
  ☆52Updated 10 months ago