Alternatives and similar repositories for microbiome-data

Users that are interested in microbiome-data are comparing it to the libraries listed below

• ubiome-opensource / microbiome-tools
  For tool creators to share their inventions that analyze, visualize, and make meaning of microbiome data.
  ☆66Updated 8 years ago
• richardsprague / uBiome
  useful tools for manipulating uBiome information
  ☆45Updated 7 years ago
• OpenHumans / gennotes
  GenNotes – public consensus annotation of genetic variants
  ☆11Updated 9 years ago
• caporaso-lab / cual-id
  A package for creating and managing sample identifiers in comparative -omics datasets.
  ☆23Updated 8 years ago
• trvrb / dynamics-practical
  Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
  ☆32Updated 11 years ago
• homologus / Pandoras-Toolbox-for-Bioinformatics
  A collection of well-known bioinformatics programs.
  ☆25Updated 10 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• jcvi / METAREP
  METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics
  ☆26Updated 12 years ago
• smdabdoub / phylotoast
  Tools for phylogenetic data analysis including visualization and cluster-computing support.
  ☆14Updated 3 years ago
• biocore / emperor
  Emperor a tool for the analysis and visualization of large microbial ecology datasets
  ☆54Updated last year
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 7 years ago
• macmanes-lab / Gen711
  ☆12Updated 8 years ago
• maasha / BioDSL
  BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.
  ☆16Updated 6 years ago
• transcript / SAMSA
  Programs and documentation for the SAMSA pipeline, version 1.0
  ☆15Updated 5 years ago
• IGS / Chiron
  Tools and utilities for running Dockerized metagenomics tools in the Cloud
  ☆22Updated 6 years ago
• ukhsa-collaboration / PHEnix
  Public Health England SNP calling pipeline.
  ☆36Updated 6 years ago
• adarob / eXpress
  Streaming fragment assignment and quantification for high-throughput sequencing.
  ☆35Updated 5 years ago
• sejmodha / MetaViC
  Virus metagenomic pipeline for unknown host or in absence of a host genome
  ☆18Updated 5 years ago
• dib-lab / genome-grist
  map Illumina metagenomes to genomes!
  ☆38Updated 2 weeks ago
• danknights / mwas
  Perform microbiome-wide association studies with a variety of models
  ☆17Updated 8 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆40Updated 5 years ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated 2 weeks ago
• hammerlab / cycledash
  Variant Caller Analysis Dashboard and Data Management System
  ☆36Updated 9 years ago
• MG-RAST / pipeline
  The MG-RAST pipeline
  ☆23Updated 2 years ago
• inutano / docker-ngs-tools
  A catalogue of docker images for NGS data analysis tools
  ☆9Updated 5 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last week
• metalhelix / pipette
  variant discovery and annotation using GATK and Ensembl
  ☆17Updated 11 years ago
• seandavi / SRAdb
  Git mirror of Bioconductor SRAdb package
  ☆23Updated 7 years ago
• seqan / lambda
  LAMBDA – the Local Aligner for Massive Biological DatA
  ☆79Updated 9 months ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated last year