Alternatives and similar repositories for PCAS

Users that are interested in PCAS are comparing it to the libraries listed below

• grswsci / fromto
  transgenes
  ☆10Updated last week
• Famingzhao / NEPAL_RawCode
  NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…
  ☆13Updated last year
• jinworks / scAB
  scAB detects multiresolution cell states with clinical significance
  ☆17Updated 2 years ago
• Zaoqu-Liu / BioEnricher
  Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer
  ☆78Updated last year
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆33Updated last month
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆38Updated last year
• bischofp / single_cell_lung_adenocarcinoma
  ☆32Updated 3 years ago
• HuangLabUMN / oncoPredict
  An R package for drug response prediction and drug-gene association prediction.
  ☆19Updated 2 months ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 5 months ago
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆21Updated 8 months ago
• bio-Pixel / panVC
  ☆50Updated last year
• genecell / COSGR
  Accurate and fast cell marker gene identification with COSG
  ☆62Updated 2 years ago
• gatelabNW / csf_aging
  Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment
  ☆27Updated 2 years ago
• dengchunyu / TIP
  The source code of web server TIP, including example data.
  ☆19Updated 6 years ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated last year
• AweKevin / TIIClnc
  Machine learning-based identification of tumor-infiltrating immune cell-associated lncRNAs for improving outcomes and immunotherapy respo…
  ☆14Updated 2 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated 2 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 8 months ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆17Updated 3 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆36Updated 2 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• wu-yc / neutrophil
  ☆15Updated 2 years ago
• Famingzhao / NEPAL
  Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer
  ☆14Updated 7 months ago
• cmutd / TCGA_GTEx
  ☆15Updated 4 years ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆68Updated 2 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• 123anjuan / HMA
  Human Muscle Ageing Cell Atlas
  ☆19Updated last year
• xjsun1221 / RSEM_with_limma_edgeR_Deseq2
  ☆37Updated 5 years ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago