theislab / scachepy
Caching extension for Scanpy
☆8Updated 4 years ago
Alternatives and similar repositories for scachepy
Users that are interested in scachepy are comparing it to the libraries listed below
Sorting:
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆27Updated 4 months ago
- ☆37Updated 8 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- ☆21Updated 2 years ago
- Code used for mouse single cell RNAseq testis atlas☆12Updated 4 years ago
- Extension of SpatialExperiment with sf☆50Updated 3 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 4 months ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- A slimmed down version of scran, based on the C++ library of the same name.☆10Updated 7 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆21Updated 3 years ago
- R API and htmlwidget for Vitessce☆40Updated 7 months ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- An R package for performing cell typing in SMI and other single cell data☆35Updated 5 months ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 6 months ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆17Updated last year
- ☆31Updated 4 years ago
- Multiview Intercellular SpaTial modeling framework☆55Updated last year
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 8 months ago
- ☆12Updated last year
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year
- ☆62Updated 2 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 8 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last week
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago