theislab / scachepyLinks
Caching extension for Scanpy
☆8Updated 4 years ago
Alternatives and similar repositories for scachepy
Users that are interested in scachepy are comparing it to the libraries listed below
Sorting:
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 7 months ago
- Fit generalized linear models in python.☆27Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- ☆27Updated 8 months ago
- R API and htmlwidget for Vitessce☆40Updated 7 months ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 9 months ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Updated 5 years ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 6 months ago
- ☆27Updated last year
- ☆21Updated 2 years ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Single cell interactive plotting tools☆23Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆18Updated last year
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆21Updated last week
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Full annotation using shape-constrained trees☆25Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- ☆31Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- An R package for visualising cell-cell interactions☆44Updated 9 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆17Updated last year
- Comparison of single cell normalization strategies☆10Updated 3 years ago
- ☆37Updated 8 years ago
- ☆43Updated 7 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year