theislab / cellrank
CellRank: dynamics from multi-view single-cell data
☆381Updated last month
Alternatives and similar repositories for cellrank:
Users that are interested in cellrank are comparing it to the libraries listed below
- A package to help convert different single-cell data formats to each other☆420Updated last year
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆331Updated 2 months ago
- Reference mapping for single-cell genomics☆363Updated 2 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆205Updated 2 months ago
- Benchmarking analysis of data integration tools☆348Updated 3 months ago
- RNA Velocity generalized through dynamical modeling☆438Updated 2 months ago
- Differential expression analysis for single-cell RNA-seq data.☆197Updated 2 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆291Updated last year
- A tool for semi-automatic cell type classification☆360Updated 2 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆326Updated 9 months ago
- This is the alpha version of the CellOracle package☆348Updated 4 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆218Updated 3 months ago
- Interpretation of cell states using reference single-cell maps☆271Updated 3 weeks ago
- A toolkit for single-cell immune profiling☆332Updated this week
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆500Updated last year
- Panoramic stitching of single cell data☆279Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆535Updated last week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆363Updated 11 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆386Updated 4 months ago
- muon is a multimodal omics Python framework☆234Updated 2 months ago
- ☆354Updated 3 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆201Updated 9 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated 2 years ago
- Python package to perform enrichment analysis from omics data.☆193Updated last week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆354Updated last month
- Scanpy Tutorials.☆212Updated last week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆419Updated 2 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated 2 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆222Updated last week
- R package for integrating and analyzing multiple single-cell datasets☆412Updated this week