theislab / cellrankLinks
CellRank: dynamics from multi-view single-cell data
☆397Updated last month
Alternatives and similar repositories for cellrank
Users that are interested in cellrank are comparing it to the libraries listed below
Sorting:
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆358Updated 2 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆238Updated this week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆371Updated last month
- This is the alpha version of the CellOracle package☆382Updated 8 months ago
- Scanpy Tutorials.☆223Updated this week
- Benchmarking analysis of data integration tools☆383Updated 2 weeks ago
- Reference mapping for single-cell genomics☆383Updated last week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆380Updated last week
- A tool for semi-automatic cell type classification☆408Updated this week
- A package to help convert different single-cell data formats to each other☆442Updated last year
- RNA Velocity generalized through dynamical modeling☆467Updated 7 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆433Updated 3 months ago
- Python package to perform enrichment analysis from omics data.☆225Updated this week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆398Updated 2 months ago
- Panoramic stitching of single cell data☆289Updated 2 months ago
- Differential expression analysis for single-cell RNA-seq data.☆204Updated 7 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆234Updated 8 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆395Updated last month
- ☆359Updated 3 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆308Updated last year
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆227Updated 5 years ago
- Single-cell epigenomics analysis tools☆289Updated last month
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆542Updated 3 months ago
- Single-cell perturbation analysis☆203Updated this week
- muon is a multimodal omics Python framework☆247Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆421Updated last month
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆472Updated last month
- Comparison of methods for trajectory inference on single-cell data 🥇☆214Updated 2 years ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆218Updated 3 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆427Updated 3 weeks ago