theislab / cellrankLinks
CellRank: dynamics from multi-view single-cell data
☆390Updated 3 months ago
Alternatives and similar repositories for cellrank
Users that are interested in cellrank are comparing it to the libraries listed below
Sorting:
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆347Updated 4 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆219Updated this week
- RNA Velocity generalized through dynamical modeling☆451Updated 4 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆338Updated 11 months ago
- Reference mapping for single-cell genomics☆374Updated last month
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆365Updated 2 weeks ago
- This is the alpha version of the CellOracle package☆366Updated 6 months ago
- Benchmarking analysis of data integration tools☆363Updated 6 months ago
- Scanpy Tutorials.☆218Updated this week
- Panoramic stitching of single cell data☆285Updated last year
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆223Updated 5 years ago
- A tool for semi-automatic cell type classification☆385Updated 2 weeks ago
- A package to help convert different single-cell data formats to each other☆433Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆199Updated 4 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆379Updated 2 months ago
- muon is a multimodal omics Python framework☆239Updated 4 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆409Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆386Updated last month
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆229Updated 5 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆298Updated last year
- Comparison of methods for trajectory inference on single-cell data 🥇☆207Updated last year
- Python package to perform enrichment analysis from omics data.☆212Updated this week
- Single cell trajectory detection☆254Updated 2 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆550Updated last week
- ☆356Updated 3 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated 2 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆234Updated last week
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆427Updated 3 weeks ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆221Updated last year
- Single-cell epigenomics analysis tools☆268Updated this week