Official implementation for our paper: Repurposing AlphaFold3-like Protein Folding Models for Antibody Sequence and Structure Co-design
☆39Jan 8, 2026Updated last month
Alternatives and similar repositories for MFDesign
Users that are interested in MFDesign are comparing it to the libraries listed below
Sorting:
- Code for humanization of antibody and nanobody☆76Aug 28, 2025Updated 6 months ago
- Code for running BinderFlow☆62Nov 21, 2025Updated 3 months ago
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆39Aug 4, 2025Updated 7 months ago
- Origin-1: a generative AI platform for de novo antibody design against novel epitopes☆51Jan 15, 2026Updated last month
- Code for "Feature selection methods affect the performance of scRNA-seq data integration and querying"☆30Mar 15, 2025Updated 11 months ago
- NeurIPS 2024 Dataset and Benchmark Submission "AsEP: Benchmarking Deep Learning Methods for Antibody-specific Epitope Prediction"☆31Aug 12, 2024Updated last year
- ☆13Mar 10, 2019Updated 6 years ago
- Docker image for☆11Dec 25, 2017Updated 8 years ago
- ☆15Jan 31, 2026Updated last month
- ☆14Oct 5, 2024Updated last year
- EXPRORER: Rational cosolvents set construction method for cosolvent molecular dynamics (CMD) with large-scale computation☆11Jul 28, 2022Updated 3 years ago
- ☆10Nov 23, 2018Updated 7 years ago
- Time series analysis in R☆14Nov 17, 2025Updated 3 months ago
- A framework for training energy-based diffusion models for sampling and energy estimation.☆92Nov 21, 2025Updated 3 months ago
- ☆11Aug 2, 2024Updated last year
- Official repository of "Multi-level Interaction Modeling for Protein Mutational Effect Prediction"☆11Jun 30, 2024Updated last year
- Wrapper tool for ancestral sequence and indel reconstruction using IQ-TREE☆11Oct 20, 2025Updated 4 months ago
- 《챗GPT와 랭체인을 활용한 LLM 기반 AI 앱 개발》(2024년 6월 출간) 예제 코드☆11Mar 7, 2025Updated 11 months ago
- Code for ICLR'24 Paper "Decoupling Weighing and Selecting for Integrating Multiple Graph Pre-training Tasks"☆10Mar 12, 2024Updated last year
- Today I Learnd☆10Mar 30, 2021Updated 4 years ago
- ☆12Jun 16, 2023Updated 2 years ago
- A Telegram bot that will send you recipes for the ingredients in your fridge.☆11Apr 10, 2021Updated 4 years ago
- ☆10Apr 1, 2022Updated 3 years ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- Scripts and data to run AbDesign as described in Tools for protein science 2021☆14Nov 4, 2020Updated 5 years ago
- ☆17Jun 20, 2025Updated 8 months ago
- Example Flox environments☆18Feb 25, 2026Updated last week
- ☆38Feb 26, 2026Updated last week
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- Jupyter notebooks - A tool to write and share executable notebooks and data visualization☆10Feb 5, 2026Updated last month
- ☆10Nov 10, 2023Updated 2 years ago
- ☆10Jan 25, 2019Updated 7 years ago
- A cyclic peptide-protein complex dataset derived from AFDB.☆36Jan 30, 2026Updated last month
- [AAAI 2024] Binding-Adaptive Diffusion Models for Structure-Based Drug Design☆20Mar 31, 2024Updated last year
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆13Feb 11, 2026Updated 3 weeks ago
- SongDriver uses a parallel mechanism of prediction and arrangement phases to achieve zero logical latency in real-time accompaniment gene…☆14Jan 5, 2026Updated 2 months ago
- mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence con…☆106Jan 9, 2026Updated last month
- DualBind is a 3D structure-based deep learning model with a dual-loss framework for accurate and fast protein-ligand binding affinity pre…☆14Oct 21, 2025Updated 4 months ago