surh / scip_barplotLinks
Workshop materials for SFSU SCIP 2022.
☆16Updated 3 years ago
Alternatives and similar repositories for scip_barplot
Users that are interested in scip_barplot are comparing it to the libraries listed below
Sorting:
- R package for microbiome biomarker discovery☆193Updated 11 months ago
- Pairwise multilevel comparison using adonis☆80Updated 2 years ago
- adegenet: a R package for the multivariate analysis of genetic markers☆198Updated 11 months ago
- Import qiime2 artifacts to R☆175Updated last year
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 6 years ago
- LoD calculator☆23Updated 6 years ago
- Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)☆12Updated 3 years ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆123Updated this week
- R tools for reconstructing metabolisms.☆14Updated last week
- JAMP - Just Another Metabarcoding Pipeline☆38Updated 4 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆129Updated 4 months ago
- Various functions for analysis of microbial community data☆47Updated 3 months ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 months ago
- Network construction, analysis, and comparison for microbial compositional data☆174Updated last month
- An R package for data analysis in microbial community ecology☆262Updated last week
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Updated 2 years ago
- ☆86Updated last year
- Species richness with high diversity☆68Updated 5 months ago
- A primer for computational tools to analyze genetics of populations in R☆89Updated 4 years ago
- Miscellaneous functions for metagenomic analysis.☆53Updated last month
- ☆227Updated this week
- Look Up Guild Information for Fungi in R☆23Updated 10 months ago
- Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data☆144Updated 11 months ago
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆30Updated 5 months ago
- microbiome R package☆308Updated 5 months ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 4 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 2 months ago