Alternatives and similar repositories for celldetection

Users that are interested in celldetection are comparing it to the libraries listed below

• Lee-Gihun / MEDIAR
  (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …
  ☆151Updated last year
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆96Updated this week
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆95Updated last month
• sartorius-research / LIVECell
  ☆190Updated last year
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆93Updated last month
• instanseg / instanseg
  ☆169Updated 2 months ago
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆47Updated 2 years ago
• MIC-DKFZ / napari-sam
  ☆236Updated last year
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆54Updated 3 years ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆175Updated this week
• marshuang80 / cell-segmentation
  PyTorch implementation of several neural network models for cellular image segmentation
  ☆47Updated 5 years ago
• Mr-TalhaIlyas / TSFD
  Nuclei segmentation and classification (Cancer cells)
  ☆25Updated last year
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆63Updated 2 years ago
• jiyuuchc / lacss
  A deep learning model for single cell segmentation from microsopy images.
  ☆36Updated this week
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆114Updated last year
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆145Updated 5 months ago
• SHIDCenter / PathoNet
  ☆36Updated 2 years ago
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆24Updated 2 years ago
• JunMa11 / NeurIPS-CellSeg
  Naive baseline for microscopy image segmentation challenge in NeurIPS 2022
  ☆61Updated last year
• TissueImageAnalytics / cerberus
  One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
  ☆90Updated 6 months ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆149Updated 8 months ago
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆162Updated 6 months ago
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆28Updated 2 years ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆109Updated 3 months ago
• PathologyDataScience / BCSS
  Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…
  ☆158Updated 3 years ago
• BiomedSciAI / histocartography
  A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…
  ☆254Updated last year
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆68Updated 2 years ago
• frankkramer-lab / miseval
  a metric library for Medical Image Segmentation EVALuation
  ☆117Updated 8 months ago
• computational-cell-analytics / micro-sam
  Segment Anything for Microscopy
  ☆555Updated this week
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆113Updated last week