FZJ-INM1-BDA / celldetectionLinks
Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
☆140Updated 2 months ago
Alternatives and similar repositories for celldetection
Users that are interested in celldetection are comparing it to the libraries listed below
Sorting:
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆153Updated last year
- ☆194Updated 2 years ago
- Encoder-Decoder Cell and Nuclei segmentation models☆93Updated 2 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆97Updated 3 weeks ago
- CoNIC Challenge☆66Updated last year
- Codebase for "A Foundation Model for Cell Segmentation"☆98Updated this week
- StarDist PyTorch☆47Updated 2 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆116Updated last year
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆306Updated 3 months ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 3 years ago
- ☆236Updated last year
- Interactive Segmentation of Nucleus☆63Updated 2 years ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆205Updated this week
- Python 3 library for the augmentation & normalization of H&E images☆57Updated 2 years ago
- ☆44Updated 2 years ago
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆160Updated 3 years ago
- Naive baseline for microscopy image segmentation challenge in NeurIPS 2022☆61Updated last year
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Inference code for HoVer-NeXt☆35Updated 3 months ago
- Virtual Alignment of pathoLogy Image Series☆166Updated 3 weeks ago
- Stain normalization tools for histological analysis and computational pathology☆147Updated 6 months ago
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆140Updated 3 years ago
- Nuclei segmentation and classification (Cancer cells)☆26Updated last year
- ☆35Updated 2 years ago
- Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets☆88Updated 2 years ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆91Updated 7 months ago
- A graph-transformer for whole slide image classification☆168Updated last year
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆24Updated 2 years ago
- Benchmarking toolkit for patch-based histopathology image classification.☆41Updated 2 years ago
- Repository for "SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology" (MedAGI2023, MICCAI2023 workshop)☆41Updated 9 months ago