Alternatives and similar repositories for celldetection:

Users that are interested in celldetection are comparing it to the libraries listed below

• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆89Updated last month
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆73Updated this week
• Lee-Gihun / MEDIAR
  (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …
  ☆151Updated 11 months ago
• TissueImageAnalytics / CoNIC
  CoNIC Challenge
  ☆64Updated last year
• TIO-IKIM / CellViT
  CellViT: Vision Transformers for Precise Cell Segmentation and Classification
  ☆282Updated 2 months ago
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆61Updated 2 years ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆54Updated 2 years ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆88Updated last week
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆46Updated 2 years ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆103Updated 2 weeks ago
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆135Updated 2 months ago
• vkola-lab / tmi2022
  A graph-transformer for whole slide image classification
  ☆163Updated 9 months ago
• instanseg / instanseg
  ☆152Updated this week
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆22Updated 2 years ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆97Updated 2 months ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆66Updated 2 years ago
• MIC-DKFZ / napari-sam
  ☆228Updated last year
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆149Updated 3 months ago
• TissueImageAnalytics / cerberus
  One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
  ☆83Updated 4 months ago
• digitalpathologybern / hover_next_inference
  Inference code for HoVer-NeXt
  ☆31Updated last month
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆114Updated last year
• sophiajw / HistAuGAN
  ☆44Updated 2 years ago
• frankkramer-lab / miseval
  a metric library for Medical Image Segmentation EVALuation
  ☆113Updated 5 months ago
• sartorius-research / LIVECell
  ☆187Updated last year
• mahmoodlab / Patch-GCN
  Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
  ☆143Updated 10 months ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 9 months ago
• lunit-io / benchmark-ssl-pathology
  Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets
  ☆84Updated last year
• wenqi006 / SlideGraph
  ☆52Updated 3 years ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆68Updated 8 months ago
• cvlab-stonybrook / SAMPath
  Repository for "SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology" (MedAGI2023, MICCAI2023 workshop)
  ☆37Updated 6 months ago