FZJ-INM1-BDA / celldetectionLinks
Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
☆145Updated 6 months ago
Alternatives and similar repositories for celldetection
Users that are interested in celldetection are comparing it to the libraries listed below
Sorting:
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆153Updated last year
- CoNIC Challenge☆69Updated last year
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated last week
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Updated 3 years ago
- ☆201Updated 2 years ago
- ☆240Updated last year
- StarDist PyTorch☆47Updated 2 years ago
- Codebase for "A Foundation Model for Cell Segmentation"☆110Updated 2 weeks ago
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆168Updated 3 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆109Updated last week
- Naive baseline for microscopy image segmentation challenge in NeurIPS 2022☆62Updated last year
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆331Updated 3 months ago
- Inference code for HoVer-NeXt☆39Updated this week
- Interactive Segmentation of Nucleus☆66Updated 2 years ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆94Updated 11 months ago
- Nuclei segmentation and classification (Cancer cells)☆25Updated last year
- This repository includes the codes and descriptions to create a fully annotated dataset of nuclei from cryosectioned histological samples…☆42Updated 2 years ago
- A graph-transformer for whole slide image classification☆172Updated last year
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆215Updated 2 months ago
- Training/Evaluation code for HoVer-NeXt☆13Updated 9 months ago
- ☆154Updated 3 months ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- [Scientific Data] The official code of "A Large-scale Synthetic Pathological Dataset for Deep Learning-enabled Segmentation of Breast Can…☆19Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- ☆43Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆156Updated 9 months ago
- This repository contains my implementations of the algorithms which MoNuSAC participants could use for data preparation to train their mo…☆64Updated 3 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆121Updated last year
- Python 3 library for the augmentation & normalization of H&E images☆62Updated 3 years ago
- ☆36Updated 2 years ago