FZJ-INM1-BDA / celldetection
Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
☆124Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for celldetection
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆76Updated this week
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆141Updated 7 months ago
- ☆180Updated last year
- ☆115Updated this week
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆20Updated last year
- Codebase for "A Foundation Model for Cell Segmentation"☆54Updated 3 months ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆112Updated 9 months ago
- StarDist PyTorch☆41Updated 2 years ago
- Segment Anything for Microscopy☆366Updated this week
- Open source Python library for building bioimage analysis pipelines☆125Updated last week
- Encoder-Decoder Cell and Nuclei segmentation models☆80Updated 4 months ago
- Interactive Segmentation of Nucleus☆61Updated last year
- PyTorch implementation of several neural network models for cellular image segmentation☆47Updated 5 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆27Updated last year
- Unsupervised Instance Segmentation in Microscopy☆21Updated 7 months ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆46Updated 2 years ago
- ☆224Updated 8 months ago
- Naive baseline for microscopy image segmentation challenge in NeurIPS 2022☆59Updated 6 months ago
- a metric library for Medical Image Segmentation EVALuation☆108Updated last month
- Nuclei segmentation and classification (Cancer cells)☆22Updated 5 months ago
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆235Updated last month
- Cloud-based data annotation tools for biological images☆76Updated 9 months ago
- Virtual Alignment of pathoLogy Image Series☆123Updated 3 months ago
- An introduction to deepcell and deep learning☆141Updated last month
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆19Updated 4 years ago
- A deep learning model for single cell segmentation from microsopy images.☆31Updated this week
- Python package for deep learning based image to image transformation☆49Updated 5 months ago
- [Scientific Data] The official code of "A Large-scale Synthetic Pathological Dataset for Deep Learning-enabled Segmentation of Breast Can…☆17Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated 2 years ago
- Inference code for HoVer-NeXt☆22Updated 2 months ago