FZJ-INM1-BDA / celldetectionLinks
Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
☆145Updated 6 months ago
Alternatives and similar repositories for celldetection
Users that are interested in celldetection are comparing it to the libraries listed below
Sorting:
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆153Updated last year
- ☆202Updated 2 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆110Updated last week
- ☆242Updated last year
- Codebase for "A Foundation Model for Cell Segmentation"☆113Updated last week
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated this week
- StarDist PyTorch☆47Updated 3 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Updated 3 years ago
- CoNIC Challenge☆69Updated last year
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆339Updated 3 months ago
- Naive baseline for microscopy image segmentation challenge in NeurIPS 2022☆62Updated last year
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆122Updated last year
- Nuclei segmentation and classification (Cancer cells)☆25Updated last year
- ☆43Updated 3 years ago
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆169Updated 3 years ago
- Inference code for HoVer-NeXt☆40Updated 3 weeks ago
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆25Updated 2 years ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆97Updated 11 months ago
- Segment Anything for Microscopy☆616Updated this week
- ☆46Updated 3 years ago
- Blood Cell Foundation Model based on DINOv2☆58Updated last year
- This repository includes the codes and descriptions to create a fully annotated dataset of nuclei from cryosectioned histological samples…☆42Updated 2 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Interactive Segmentation of Nucleus☆66Updated 2 years ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆225Updated 2 weeks ago
- A graph-transformer for whole slide image classification☆173Updated last year
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆180Updated this week
- This repository contains my implementations of the algorithms which MoNuSAC participants could use for data preparation to train their mo…☆65Updated 3 years ago
- Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets☆92Updated 2 years ago
- The repository contains a simple pipeline for training Nuclei Segmentation Datasets of Histopathology Images.☆35Updated 2 years ago