Alternatives and similar repositories for DeepSea

Users that are interested in DeepSea are comparing it to the libraries listed below

• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆186Updated this week
• peng-lab / BaSiCPy
  ☆90Updated 2 weeks ago
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆109Updated this week
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆108Updated this week
• mehta-lab / dynamorph
  Learn morphological states of dynamic cells
  ☆12Updated 2 years ago
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆98Updated 2 years ago
• instanseg / instanseg
  ☆195Updated 2 weeks ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆82Updated this week
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆125Updated last week
• KerenLab / CellSighter
  ☆35Updated last year
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated 6 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆69Updated last year
• cbib / DeepSpot
  DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images
  ☆16Updated 3 years ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆72Updated last week
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆82Updated last year
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆156Updated last week
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆98Updated 3 weeks ago
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆81Updated 2 weeks ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆156Updated 3 months ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆141Updated this week
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆105Updated last month
• fish-quant / ComSeg
  comseg
  ☆24Updated 9 months ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆83Updated this week
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆85Updated 7 months ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆151Updated last month
• computational-cell-analytics / dl-for-micro
  Course and exercises on deep learning for microscopy image analysis
  ☆19Updated 2 weeks ago
• BiAPoL / Bio-image_Analysis_with_Python
  Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…
  ☆230Updated 2 years ago
• OakesLab / AFT-Alignment_by_Fourier_Transform
  ☆16Updated last year
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆99Updated 7 months ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated 2 months ago