t-neumann / slamdunk
Streamlining SLAM-seq analysis with ultra-high sensitivity
☆47Updated 11 months ago
Alternatives and similar repositories for slamdunk
Users that are interested in slamdunk are comparing it to the libraries listed below
Sorting:
- Full-length transcriptome splicing and mutation analysis☆83Updated 10 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆64Updated 6 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 3 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 5 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆52Updated 2 weeks ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- A continually expanding collection of RNA-seq tools☆49Updated 7 months ago
- A tool to identify CLIP-seq peaks☆67Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 5 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆43Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Clustering motif models to remove redundancy☆40Updated 2 years ago
- ☆58Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆60Updated 2 weeks ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆130Updated 10 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆74Updated 9 months ago
- ☆116Updated last year
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor …☆45Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆70Updated last month
- phasing and Allele Specific Expression from RNA-seq☆114Updated 10 months ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆140Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 5 months ago
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆77Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 6 months ago