Streamlining SLAM-seq analysis with ultra-high sensitivity
☆48May 22, 2024Updated last year
Alternatives and similar repositories for slamdunk
Users that are interested in slamdunk are comparing it to the libraries listed below
Sorting:
- Workflow to reproduce results and figures for the second BeatAML manuscript☆14Jun 28, 2022Updated 3 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 30, 2023Updated 2 years ago
- An R package to interpret biological trends from DNA methylation data☆18May 24, 2022Updated 3 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- A R/shiny web application to browse and compare public RNA-seq / ChIP-seq / CAGE datasets☆18Jul 10, 2020Updated 5 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- NGS perl modules☆11Updated this week
- Processing and analysis of data coming from Illumina sequencing machines☆10Mar 2, 2026Updated last week
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 2 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 5 years ago
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 9 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆12May 31, 2023Updated 2 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 6 years ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 7 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- ☆12Jan 21, 2016Updated 10 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 3 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88May 15, 2019Updated 6 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Dec 2, 2022Updated 3 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 5 years ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 5 years ago
- An interactive Shiny web application for genomic interval enrichment analysis using LOLA.☆16Apr 17, 2022Updated 3 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆52Oct 16, 2022Updated 3 years ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- ☆15Oct 19, 2023Updated 2 years ago