t-neumann / slamdunkLinks
Streamlining SLAM-seq analysis with ultra-high sensitivity
☆48Updated last year
Alternatives and similar repositories for slamdunk
Users that are interested in slamdunk are comparing it to the libraries listed below
Sorting:
- Full-length transcriptome splicing and mutation analysis☆83Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 8 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 5 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆76Updated 11 months ago
- ☆117Updated last year
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆130Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- Analysis pipelines for genomic sequencing data☆68Updated last month
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆75Updated last month
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆103Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 8 months ago
- Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency☆151Updated 8 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆106Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆64Updated last week
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 7 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆173Updated last year
- ☆87Updated last week
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated 3 weeks ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆72Updated 3 months ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated last week
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆130Updated 10 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆108Updated 5 years ago