Alternatives and similar repositories for HarmonizR

Users that are interested in HarmonizR are comparing it to the libraries listed below

• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆34Updated 4 years ago
• pnnl / leapR
  ☆18Updated last month
• broadinstitute / protigy
  Proteomics Toolset for Integrative Data Analysis
  ☆25Updated 6 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆45Updated last week
• pmartR / pmartR
  The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…
  ☆46Updated 2 months ago
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆16Updated last week
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆24Updated 5 months ago
• tidymass / tidymass
  tidymass
  ☆58Updated 2 weeks ago
• statOmics / MSqRob
  Robust statistical inference for quantitative LC-MS proteomics
  ☆34Updated 2 years ago
• WMBEdmands / MetMSLine
  R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software
  ☆10Updated 8 years ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 4 months ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆27Updated 4 months ago
• jpquast / protti
  Picotti lab data analysis package.
  ☆64Updated 5 months ago
• sneumann / mzR
  This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…
  ☆45Updated last month
• ProtProtocols / IsoProt
  Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
  ☆12Updated 6 years ago
• jaspershen / MetNormalizer
  MetNormalizer is used to normalize large scale metabolomics data.
  ☆22Updated 4 years ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆29Updated last year
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 4 years ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆97Updated last month
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• omarwagih / rmotifx
  Discovery of biological sequence motifs in R
  ☆27Updated 6 years ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆21Updated last year
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆23Updated 4 months ago
• ZhuMetLab / MetDNA2
  Knowledge-guided multilayer network approach is executed in MetDNA2
  ☆16Updated 2 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆62Updated 3 months ago
• xia-lab / MetaboAnalyst_Docker
  Docker for MetaboAnalyst 4.0
  ☆24Updated 4 years ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 2 months ago