Alternatives and similar repositories for speos

Users that are interested in speos are comparing it to the libraries listed below

• mhorlacher / rbpnet
  ☆18Updated last year
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆25Updated 3 years ago
• liu-bioinfo-lab / EPCOT
  ☆24Updated last year
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆27Updated 2 years ago
• xiongxslab / Translatomer
  ☆24Updated last month
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆49Updated 6 months ago
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆30Updated 8 months ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆29Updated 6 months ago
• JiaqiLiZju / Nvwa
  ☆35Updated 3 years ago
• zhoujt1994 / scHiCluster
  ☆68Updated 4 months ago
• SUwonglab / PECA
  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
  ☆45Updated last week
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆37Updated 2 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated last year
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• wangjuan001 / hicplus
  ☆12Updated 4 years ago
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆19Updated 2 months ago
• pathint / reoa
  Relative Expression Ordering Analysis (REOA) package
  ☆21Updated 2 years ago
• ma-compbio / Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
  ☆90Updated last year
• goodarzilab / SwitchFinder
  ☆18Updated last year
• ketringjoni / SuPreMo
  Pipeline for generating reference and perturbed sequences for input into predictive models.
  ☆11Updated 11 months ago
• jzhoulab / puffin_manuscript
  ☆17Updated 11 months ago
• mostafavilabuw / EnformerAssessment
  ☆24Updated last year
• jishnu-lab / SLIDE
  ☆29Updated 4 months ago
• canzarlab / McSplicer
  ☆11Updated 3 years ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆26Updated last year
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆69Updated 2 years ago
• yal054 / epiformer
  ☆26Updated 6 months ago
• y9c / m6A-SACseq
  🧪 Optimized protocol for m6A-SAC-seq
  ☆11Updated 4 months ago