A positive-unlabeled ensemble learning framework for disease gene prioritization.
☆21Nov 10, 2025Updated 11 months ago
Alternatives and similar repositories for speos
Users that are interested in speos are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SUPREME: A GCN based approach for cancer subtype prediction☆18Aug 9, 2023Updated 3 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆14Mar 7, 2023Updated 3 years ago
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆14Jan 14, 2022Updated 4 years ago
- A collection of commonly used formats for quick lookup.☆14Aug 3, 2026Updated 3 months ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆13Oct 30, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Quantifying the regulatory potential of genetic variants via a hybrid sequence-oriented model☆10Jan 17, 2025Updated last year
- R package BioPred☆11Jun 7, 2024Updated 2 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆16Apr 12, 2026Updated 6 months ago
- 📊 Multi-omics Integration Benchmarking: This repository benchmarks GAUDI against state-of-the-art multi-omics integration methods for ca…☆10Aug 6, 2025Updated last year
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated 3 months ago
- ☆13Jul 31, 2025Updated last year
- Annotation Extraction Genomic Integration Suite (AEGIS) is a powerful and flexible Python-based suite for the manipulation, analysis, and…☆16Updated this week
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆14Oct 22, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code for the paper GCLink: a graph contrastive link prediction framework for gene regulatory network inference☆14Jun 21, 2026Updated 4 months ago
- GWAS genetics Fine-mapping method☆19Jul 27, 2026Updated 3 months ago
- ☆11May 3, 2022Updated 4 years ago
- a deep learning framework for essential protein prediction☆13Mar 24, 2023Updated 3 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆19Sep 16, 2021Updated 5 years ago
- Codes for generating stlearn figures☆11May 22, 2023Updated 3 years ago
- Programming for Biology @ CSHL 2024☆12Oct 7, 2025Updated last year
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆13Jan 30, 2023Updated 3 years ago
- ☆36Dec 19, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Annotated sequence data☆11Feb 2, 2025Updated last year
- A Python wrapper for the bioRxiv API.☆11Aug 18, 2021Updated 5 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 4 years ago
- Phenotype Aware Components Analysis is a contrastive learning approach leveraging CCA to robustly capture weak sources of subphenotypic v…☆11Oct 21, 2025Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆17May 16, 2023Updated 3 years ago
- ☆19Apr 25, 2023Updated 3 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆23Oct 9, 2020Updated 6 years ago
- Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor☆10Mar 19, 2026Updated 7 months ago
- CIPHER: Covariance Inference for Perturbation and High-dimensional Expression Response☆13Oct 5, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Dec 17, 2025Updated 10 months ago
- A deep-learning framework for multi-omics integration (RNA-seq, CNV, DNA methylation, etc.)☆35Aug 28, 2026Updated 2 months ago
- KiMONo is a network inference tool for multi-omics datasets. The multi-omics network is calculated by sparse-group-LASSO regression and c…☆11Nov 21, 2022Updated 3 years ago
- Molecular interactions inference from single-cell multi-omics data☆33May 7, 2026Updated 5 months ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 6 years ago
- Code accompanying "Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx"☆11Oct 17, 2022Updated 4 years ago
- ☆13Apr 23, 2025Updated last year