fratajcz / speosLinks
A positive-unlabeled ensemble learning framework for disease gene prioritization.
☆17Updated 3 months ago
Alternatives and similar repositories for speos
Users that are interested in speos are comparing it to the libraries listed below
Sorting:
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆11Updated 2 years ago
- Code for "Gene-Gene Interaction Detection with Deep Learning"☆12Updated 2 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- ☆18Updated last year
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆26Updated 2 years ago
- ☆43Updated last year
- A VGAE-based model to infer transcription factor regulatory network☆27Updated 2 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- ☆33Updated 2 years ago
- Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.☆17Updated this week
- ☆44Updated 3 years ago
- Python package to load and query ARCHS4 data☆23Updated 3 months ago
- ACTIONet single-cell analysis framework☆42Updated 9 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 7 months ago
- ☆11Updated 4 years ago
- ☆11Updated 3 years ago
- Predicting gene expression levels from genomic sequences☆53Updated 5 years ago
- ☆21Updated 4 months ago
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago
- ☆17Updated 8 months ago
- ☆22Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆35Updated 2 years ago
- ☆13Updated 5 months ago
- ☆10Updated last year
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 2 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- ☆13Updated 5 years ago
- GREAT algorithm in Python☆14Updated 2 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year