fratajcz / speosView external linksLinks
A positive-unlabeled ensemble learning framework for disease gene prioritization.
☆20Nov 10, 2025Updated 3 months ago
Alternatives and similar repositories for speos
Users that are interested in speos are comparing it to the libraries listed below
Sorting:
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 2 years ago
- SUPREME: A GCN based approach for cancer subtype prediction☆18Aug 9, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 3 weeks ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Oct 30, 2024Updated last year
- ☆11May 3, 2022Updated 3 years ago
- GWAS genetics Fine-mapping method☆17May 17, 2024Updated last year
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆15Nov 23, 2025Updated 2 months ago
- a deep learning framework for essential protein prediction☆13Mar 24, 2023Updated 2 years ago
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆14Oct 22, 2023Updated 2 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Jan 30, 2023Updated 3 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆18Sep 16, 2021Updated 4 years ago
- ☆19Apr 25, 2023Updated 2 years ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Updated this week
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16May 16, 2023Updated 2 years ago
- ☆26Oct 8, 2025Updated 4 months ago
- Network construction Algorithm☆22Sep 5, 2024Updated last year
- interactive Multi Objective K-mer Analysis☆23Mar 5, 2023Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Aug 3, 2023Updated 2 years ago
- ☆22Feb 22, 2024Updated last year
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆30Jan 14, 2026Updated last month
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆27Jun 21, 2023Updated 2 years ago
- An interpretable deep-learning architecture of capsule networks for identifying cellular-type gene expression programs from single-cell R…☆26Dec 3, 2020Updated 5 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Jul 23, 2025Updated 6 months ago
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆28May 5, 2025Updated 9 months ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- A novel method for sequence similarity estimation☆28Mar 23, 2024Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Mar 27, 2019Updated 6 years ago
- R Package for Bootstrap Unit Root Tests☆10May 5, 2025Updated 9 months ago
- A tool to extract and annotate genes from raw RNA-seq reads.☆10Dec 20, 2024Updated last year
- ☆10Sep 29, 2023Updated 2 years ago
- ☆13May 27, 2025Updated 8 months ago
- Repository☆10Oct 23, 2024Updated last year
- WhatsCloud is an android app which allows you to analyze your WhatsApp chat history on the fly with only one click☆12Jul 29, 2019Updated 6 years ago
- Python package designed for single-cell calling cards data☆16Jun 8, 2025Updated 8 months ago
- ☆11Feb 6, 2026Updated last week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆43Oct 24, 2025Updated 3 months ago
- Graph Clustering Merger☆36Mar 25, 2024Updated last year
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Jul 19, 2024Updated last year