fratajcz / speosLinks
A positive-unlabeled ensemble learning framework for disease gene prioritization.
☆20Updated 2 months ago
Alternatives and similar repositories for speos
Users that are interested in speos are comparing it to the libraries listed below
Sorting:
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆27Updated 2 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- ☆24Updated 2 months ago
- ☆68Updated 5 months ago
- ☆11Updated 3 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated last month
- Saluki, a method to predict mRNA half-lives from sequence☆26Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Updated last year
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- ☆24Updated 2 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 11 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆91Updated last week
- ☆12Updated 4 years ago
- ☆36Updated 3 years ago
- model-based understanding of single-cell CRISPR screening☆25Updated 10 months ago
- ☆18Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- ACTIONet single-cell analysis framework☆43Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆38Updated 2 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 6 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆70Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- GREAT algorithm in Python☆14Updated 3 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 7 months ago
- Relative Expression Ordering Analysis (REOA) package☆21Updated 2 years ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆19Updated 4 years ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆12Updated 2 years ago
- ☆44Updated 3 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆30Updated 9 months ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 3 months ago