limix / pandas-plinkLinks
PLINK reader for Python.
☆88Updated 5 months ago
Alternatives and similar repositories for pandas-plink
Users that are interested in pandas-plink are comparing it to the libraries listed below
Sorting:
- Linear mixed model for genomic analyses.☆107Updated 4 years ago
- liftover for python, made fast with cython☆91Updated 3 weeks ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆99Updated last year
- ☆74Updated 4 years ago
- Applying polygenic scores (PGS) on imputed genotypes☆31Updated last week
- ☆100Updated 3 years ago
- GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…☆30Updated last month
- ☆50Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆87Updated last week
- Collection of analysis tools for quantitative trait loci☆60Updated last month
- Cross-population polygenic prediction☆91Updated 11 months ago
- MOsaic CHromosomal Alterations (MoChA) caller☆88Updated 2 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆106Updated 2 months ago
- ☆33Updated 4 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆107Updated 4 years ago
- ☆27Updated 5 months ago
- ☆183Updated 2 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆76Updated 5 years ago
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆47Updated last year
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆236Updated last month
- GO enrichment with python -- pandas meets networkx☆88Updated 5 years ago
- Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…☆82Updated last year
- A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.☆43Updated 9 years ago
- Hail helper functions for the gnomAD project and Translational Genomics Group☆97Updated last week
- Python module to read binary Plink files.☆17Updated last year
- GTEx Visualizations☆65Updated 4 years ago
- Tools to work with GWAS-VCF summary statistics files☆125Updated 2 months ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- PrediXcan Project☆113Updated 3 years ago