snijderlab / align-cli
A CLI for pairwise alignment of sequences, using both normal and mass based alignment.
☆13Updated 3 weeks ago
Alternatives and similar repositories for align-cli:
Users that are interested in align-cli are comparing it to the libraries listed below
- Protein Sequence Annotation with Language Models☆20Updated 6 months ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 10 months ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆14Updated last year
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆26Updated last week
- Software for predicting translation initiation rates in bacteria☆22Updated 5 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated 2 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆26Updated 4 months ago
- Fast protein domain structure embedding+search tool☆19Updated this week
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆23Updated 6 months ago
- Transmembrane proteins predicted through Language Model embeddings☆35Updated 3 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 weeks ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated this week
- A domain parser for Alphafold models☆36Updated last year
- ☆11Updated 5 months ago
- DeepECtransformer☆24Updated last year
- Code for LazyAF pipeline☆20Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆41Updated 3 years ago
- Template-based RNA secondary structure visualization☆26Updated 5 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- UniProt Id Mapping through API☆31Updated 7 months ago
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆19Updated 3 weeks ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆21Updated last year
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆32Updated this week
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆20Updated last month
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆16Updated 2 years ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Updated 3 months ago
- Protein structure alignment and search algorithm☆59Updated last month
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- a pipeline to build similarity maps of protein space☆34Updated 5 months ago