snijderlab / align-cliLinks
A CLI for pairwise alignment of sequences, using both normal and mass based alignment.
☆13Updated this week
Alternatives and similar repositories for align-cli
Users that are interested in align-cli are comparing it to the libraries listed below
Sorting:
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆17Updated last year
- Protein Sequence Annotation with Language Models☆23Updated 3 months ago
- Software for predicting translation initiation rates in bacteria☆29Updated last month
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated 3 weeks ago
- Protein structure alignment and search algorithm☆70Updated last week
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆28Updated this week
- Generation and update of protein families☆19Updated 3 weeks ago
- MicrobeRX☆11Updated last month
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆56Updated last month
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated last week
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆30Updated last year
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- DeepECtransformer☆28Updated last year
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆23Updated last year
- Genome mining tool for novel RiPP BGCs☆14Updated 2 years ago
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆10Updated last month
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆22Updated 4 months ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆21Updated 6 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 8 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 3 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆59Updated 4 years ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style☆16Updated 3 months ago
- ☆28Updated last year
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆21Updated 2 weeks ago
- ☆11Updated 9 months ago
- UniProt Id Mapping through API☆35Updated 11 months ago