snijderlab / align-cli
A CLI for pairwise alignment of sequences, using both normal and mass based alignment.
☆12Updated last week
Alternatives and similar repositories for align-cli:
Users that are interested in align-cli are comparing it to the libraries listed below
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆22Updated 5 months ago
- Python framework for doing ancestral sequence reconstruction☆39Updated 9 months ago
- Software for predicting translation initiation rates in bacteria☆22Updated 4 months ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆14Updated last year
- Feature map and function annotation of Proteins☆32Updated 9 months ago
- Transmembrane proteins predicted through Language Model embeddings☆35Updated 2 months ago
- DeepECtransformer☆24Updated last year
- ☆11Updated 4 months ago
- ☆16Updated 3 weeks ago
- Evolutionary conservation estimation of residues or nucleotides☆38Updated 3 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆25Updated 3 months ago
- Fast protein domain structure embedding+search tool☆16Updated last week
- Code for LazyAF pipeline☆21Updated last year
- A domain parser for Alphafold models☆34Updated last year
- Protein Sequence Annotation with Language Models☆19Updated 5 months ago
- UniProt Id Mapping through API☆31Updated 6 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 years ago
- Detection of remote homology by comparison of protein language model representations☆49Updated 3 months ago
- ☆11Updated 3 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆39Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆82Updated last year
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆18Updated this week
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated last month
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆33Updated this week
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆16Updated 2 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- ☆37Updated 6 months ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆32Updated 2 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆53Updated last week
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated last year