bioinfo-chru-strasbourg / howardLinks
Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery
☆10Updated last month
Alternatives and similar repositories for howard
Users that are interested in howard are comparing it to the libraries listed below
Sorting:
- Short Tandem Repeat disease loci resource☆18Updated this week
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 6 months ago
- ☆40Updated 9 months ago
- ☆13Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- TRGT Repeat expansion summary☆10Updated 2 years ago
- ☆22Updated 2 years ago
- Variant annotation and merging pipeline☆34Updated last week
- A python wrapper around SURVIVOR☆20Updated last year
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- ☆48Updated 11 months ago
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- ☆31Updated 2 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆12Updated 2 weeks ago
- Structural variant benchmark☆17Updated 3 months ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- ☆30Updated 2 years ago
- Detection of CNVs (deletion/duplication) in target panel based NGS data☆16Updated 2 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- python plotly Circos from VCF☆37Updated 11 months ago
- Working space for the GIAB TR benchmarking project☆21Updated 7 months ago
- Tandem repeat genotyping from long reads☆15Updated 2 months ago
- ☆30Updated 9 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- SV calling for diploid assemblies☆27Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Structural variant caller☆54Updated 3 years ago
- De novo tandem repeat calling from PacBio HiFi data☆17Updated this week