Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery
☆13Jun 14, 2026Updated this week
Alternatives and similar repositories for howard
Users that are interested in howard are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A customizable genetic variants file format converter.☆11May 22, 2026Updated 3 weeks ago
- python plotly Circos from VCF☆42Jun 20, 2024Updated last year
- ☆12Apr 18, 2022Updated 4 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- ☆15Dec 16, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A standalone and free application to explore genetics variations from VCF file☆108Mar 31, 2026Updated 2 months ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆21Jan 4, 2026Updated 5 months ago
- A nextflow pipeline for calling exome CNVs☆14May 28, 2026Updated 3 weeks ago
- ☆11Dec 24, 2024Updated last year
- Short Tandem Repeat disease loci resource☆29Jun 12, 2026Updated last week
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- WebApp for DNA variants interpretation☆16Jun 9, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆19Jun 10, 2026Updated last week
- Set of tools to manipulate and visualize modified base bam files☆62Aug 2, 2022Updated 3 years ago
- ☆12Oct 11, 2024Updated last year
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated last month
- Variant catalogue pipeline☆26Jan 30, 2026Updated 4 months ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Apr 17, 2026Updated 2 months ago
- simple viewer for variant call format using htslib☆33Jan 17, 2017Updated 9 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- Variant annotation and merging pipeline☆43Jul 22, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- structural variant database software☆49May 28, 2026Updated 3 weeks ago
- Bioinformatics web-platform visualisation dashboard creation☆44Jun 12, 2026Updated last week
- TIDDIT - structural variant calling☆10Dec 8, 2025Updated 6 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Jun 12, 2026Updated last week
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆68Updated this week
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Oct 28, 2025Updated 7 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- A VCF comparison engine for structual variant benchmarking☆24Sep 26, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Filter fasta/fastq(.gz) files by ID and/or sequence length☆14Feb 8, 2020Updated 6 years ago
- ☆15Oct 3, 2017Updated 8 years ago
- FastQC port to Qt5: A quality control tool for high throughput sequence data.☆114Aug 4, 2020Updated 5 years ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆18Feb 11, 2025Updated last year
- A tool kit to manage many variant on desktop computer☆13Jan 13, 2026Updated 5 months ago
- An online pedigree tool for research applications. Build pedigrees interactively and store as images or text files in ped format. QuickPe…☆30Jun 9, 2026Updated last week
- Transform the macOS CLI into a fresh GNU/Linux CLI experience by installing missing GNU programs, updating outdated GNU programs, replaci…☆15Jan 22, 2026Updated 4 months ago