Alternatives and similar repositories for vcf_fdw_postgresql

Users that are interested in vcf_fdw_postgresql are comparing it to the libraries listed below

• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆42Updated 2 years ago
• mutalyzer / description-extractor
  HGVS variant description extractor
  ☆11Updated 5 years ago
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆60Updated 7 years ago
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆86Updated 2 weeks ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 3 years ago
• DataBiosphere / job-manager
  Job Manager API and UI for interacting with asynchronous batch jobs and workflows.
  ☆27Updated 4 months ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆49Updated 2 years ago
• Illumina / Isaac3
  Aligner for sequencing data
  ☆18Updated 7 years ago
• caporaso-lab / cual-id
  A package for creating and managing sample identifiers in comparative -omics datasets.
  ☆23Updated 8 years ago
• personalis / hgvslib
  hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …
  ☆18Updated 2 years ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆47Updated last month
• hammerlab / cycledash
  Variant Caller Analysis Dashboard and Data Management System
  ☆36Updated 9 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• ga4gh / tool-registry-service-schemas
  APIs for discovering genomics tools, their metadata and their containers
  ☆32Updated 3 months ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• ga4gh / htsget-refserver
  Reference server implementation for the GA4GH HTSget API standard.
  ☆12Updated 2 years ago
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆27Updated 3 months ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆33Updated 2 months ago
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆76Updated last week
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆71Updated 2 months ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 4 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 3 weeks ago
• HAShihab / fathmm-MKL
  Predict the functional consequences of both coding and non-coding single nucleotide variants (SNVs)
  ☆20Updated 4 years ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆99Updated 7 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆61Updated last week
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• ga4gh-beacon / beacon-elixir
  Elixir Beacon Reference Implementation. Latest release is compliant with v1.1.0 of the specification.
  ☆14Updated 5 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 8 years ago
• iobio / bam.iobio.io
  http://bam.iobio.io
  ☆47Updated last year
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆36Updated 6 months ago