smithijk / vcf_fdw_postgresqlLinks
A PostgreSQL foreign data wrapper for VCF files.
☆18Updated 8 years ago
Alternatives and similar repositories for vcf_fdw_postgresql
Users that are interested in vcf_fdw_postgresql are comparing it to the libraries listed below
Sorting:
- Python client for GA4GH htsget protocol☆15Updated 3 years ago
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- Server wrapper that turns command line tools into web services☆60Updated 7 years ago
- HGVS variant description extractor☆11Updated 5 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- WDL plugin for pytest☆49Updated 2 years ago
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Updated 3 years ago
- Variant Caller Analysis Dashboard and Data Management System☆36Updated 9 years ago
- The WES API is a standard way to run and manage portable workflows.☆87Updated last month
- GA4GH Variation Representation Python Implementation☆61Updated last week
- non-redundant, compressed, journalled, file-based storage for biological sequences☆47Updated 2 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 4 years ago
- ☆93Updated last month
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆71Updated 3 months ago
- Elixir Beacon Reference Implementation. Latest release is compliant with v1.1.0 of the specification.☆14Updated 5 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36Updated 7 months ago
- The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. …☆105Updated 3 years ago
- A package for creating and managing sample identifiers in comparative -omics datasets.☆23Updated 8 years ago
- High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a ne…☆92Updated last week
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Updated 5 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆71Updated 3 months ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆77Updated last month
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Request for comments on interchangeable bioinformatics containers☆39Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- APIs for discovering genomics tools, their metadata and their containers☆33Updated 2 weeks ago
- Docker images of bioinformatics software☆21Updated 8 years ago