Alternatives and similar repositories for htsget:

Users that are interested in htsget are comparing it to the libraries listed below

• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• ga4gh-beacon / specification
  GA4GH Beacon specification.
  ☆32Updated 2 years ago
• mlin / spVCF
  Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently
  ☆58Updated last year
• ga4gh-beacon / beacon-elixir
  Elixir Beacon Reference Implementation. Latest release is compliant with v1.1.0 of the specification.
  ☆14Updated 4 years ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆40Updated last week
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆29Updated last month
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆63Updated 2 weeks ago
• opencb / iva
  Generic Interactive Variant Analysis browser
  ☆29Updated 2 years ago
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆18Updated last month
• cobilab / cryfa
  A secure encryption tool for genomic data
  ☆56Updated 10 months ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• disq-bio / disq
  A library for manipulating bioinformatics sequencing formats in Apache Spark
  ☆32Updated last week
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 7 years ago
• statgenetics / seqspark
  SEQSpark documentation
  ☆18Updated 4 years ago
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆60Updated 7 months ago
• eilbecklab / clinvar-miner
  Website to analyze conflicting assertions in ClinVar
  ☆17Updated last year
• vatlab / varianttools
  software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
  ☆31Updated 3 years ago
• PGDX / cerebro-paper
  ☆23Updated 6 years ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆86Updated this week
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆53Updated this week
• personalis / hgvslib
  hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …
  ☆18Updated 2 years ago
• brentp / bigly
  a pileup library that embraces the huge
  ☆42Updated 4 years ago
• sequencing / gvcftools
  Utilities to create and analyze gVCF files
  ☆39Updated 7 years ago
• SciLifeLab / genologics
  Python interface to the GenoLogics LIMS server via its REST API.
  ☆29Updated 5 months ago
• googlegenomics / pipelines-tools
  Tools for developing and running pipelines with the Genomics API
  ☆24Updated 5 years ago
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated 3 months ago
• PapenfussLab / PathOS
  PathOS is a clinical application for filtering, analysing and reporting on NGS variants
  ☆28Updated 3 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated last year
• Yandell-Lab / VVP-pub
  VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
  ☆19Updated 6 years ago
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆34Updated this week