googlegenomics / htsgetLinks
Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage
☆24Updated 5 years ago
Alternatives and similar repositories for htsget
Users that are interested in htsget are comparing it to the libraries listed below
Sorting:
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- Bioinformatic infrastructure libraries☆78Updated 5 years ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆47Updated last month
- Tools for developing and running pipelines with the Genomics API☆24Updated 5 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- VarFish: comprehensive DNA variant analysis for diagnostics and research☆48Updated this week
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆70Updated last month
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Extensible specification for representing and uniquely identifying biological sequence variation☆94Updated 2 months ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆11Updated 2 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- GCP Variant Transforms☆141Updated 3 months ago
- Natural Language Search and Analysis of High Dimensional Genomic Data☆48Updated 2 months ago
- a pileup library that embraces the huge☆43Updated 5 years ago
- CLI for interacting with Cromwell servers☆55Updated last year
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- On-demand containers provisioning service☆44Updated last week
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Query language for filtering SAM/BAM reads☆31Updated 11 months ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Multi-nucleotide variants (MNVs) in gnomAD 2.1☆12Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago