googlegenomics / htsgetLinks
Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage
☆24Updated 5 years ago
Alternatives and similar repositories for htsget
Users that are interested in htsget are comparing it to the libraries listed below
Sorting:
- Bioinformatic infrastructure libraries☆79Updated 5 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- non-redundant, compressed, journalled, file-based storage for biological sequences☆42Updated last week
- Tools for developing and running pipelines with the Genomics API☆24Updated 5 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- Python interface to the GenoLogics LIMS server via its REST API.☆29Updated 2 weeks ago
- (WIP) best-practices workflow for rare disease☆60Updated last year
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- ☆25Updated 4 years ago
- WDL’s and Dockerfiles for assembly QC process☆68Updated last month
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- Generic Interactive Variant Analysis browser☆29Updated 3 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Natural Language Search and Analysis of High Dimensional Genomic Data☆48Updated 3 weeks ago
- A Mendelian approach to variant effect prediction built in keras☆19Updated 10 months ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆28Updated 8 months ago
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- SQL-like query language for the SAM/BAM file format☆29Updated last year
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- A tool to genotype CYP2D6 with WGS data☆53Updated last year
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Portable database of microhaplotype marker and allele frequency data☆10Updated last month
- Variant Interpretation Pipeline☆42Updated last week
- Real time data analysis tools for the minION sequencing platform.☆30Updated 3 years ago