raonyguimaraes / pynnotator
This is a Genome Annotation Framework developed with the goal of annotating VCF files (Exomes or Genomes) from patients with Mendelian Disorders.
☆23Updated 3 years ago
Related projects: ⓘ
- NExt generation Analysis Toolbox☆14Updated 8 years ago
- cache packages permanently☆12Updated 2 months ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Class materials for the NIH HPC snakemake class☆16Updated 3 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆17Updated 5 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- Python client for GA4GH htsget protocol☆15Updated last year
- Validate FastQ Files☆36Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆21Updated 5 years ago
- App for hosting gene expression/ontology data with Shiny☆17Updated 6 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated 8 months ago
- GWAS and rare variants tests at high speed using regenie☆10Updated 3 months ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated last month
- Perform microbiome-wide association studies with a variety of models☆16Updated 7 years ago
- ☆10Updated this week
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- The SnoVault general purpose hybrid object-relational database☆16Updated 6 months ago
- What's The Function of these genes?☆23Updated 7 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated last year
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 8 years ago
- Easily run WDL workflows on GCP☆13Updated 2 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- ☆19Updated 3 years ago
- Project metadata manager for PEPs in Python☆37Updated last week
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆44Updated 5 years ago
- ☆21Updated 8 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Updated 6 years ago
- Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R☆17Updated 8 years ago