SciLifeLab / genologics
Python interface to the GenoLogics LIMS server via its REST API.
☆29Updated 7 months ago
Alternatives and similar repositories for genologics:
Users that are interested in genologics are comparing it to the libraries listed below
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆52Updated 7 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- An awk-like VCF parser☆56Updated last year
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Assembly Based ReAligner☆73Updated 6 years ago
- Aligner for sequencing data☆21Updated 8 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 4 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 3 months ago
- NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.☆14Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 8 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago