Python interface to the GenoLogics LIMS server via its REST API.
☆30Aug 13, 2025Updated 6 months ago
Alternatives and similar repositories for genologics
Users that are interested in genologics are comparing it to the libraries listed below
Sorting:
- A tool to call somatic single nucleotide variants.☆41Aug 21, 2015Updated 10 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆17Jul 13, 2018Updated 7 years ago
- API libraries, application examples, and custom tools for BaseSpace Clarity LIMS☆19Jul 3, 2020Updated 5 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- Python interface to the GenoLogics LIMS server via its REST API.☆11Mar 30, 2022Updated 3 years ago
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 8 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 11 years ago
- ☆10Jun 9, 2020Updated 5 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- An argument parsing library for Scala☆11Jan 23, 2026Updated last month
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Mar 22, 2017Updated 8 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆13Updated this week
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 3 months ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆25Jan 12, 2026Updated last month
- Gene copy number prediction from k-mer frequencies☆15Jul 29, 2024Updated last year
- Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm☆14Feb 4, 2026Updated 3 weeks ago
- This repository contains a list of tools or methods that have been used in GIAB analysis☆29Nov 15, 2019Updated 6 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆36Oct 14, 2025Updated 4 months ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆12Apr 14, 2022Updated 3 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.☆16Nov 20, 2024Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 7 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 8 months ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- A Mendelian approach to variant effect prediction built in keras☆20Nov 3, 2025Updated 3 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated 11 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- A PostgreSQL foreign data wrapper for VCF files.☆18May 8, 2017Updated 8 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 3 months ago
- ☆19Updated this week